PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004768-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 326aa    MW: 36495.6 Da    PI: 6.5795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004768-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.72.8e-24132191258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    dDg +WrKYGqK++ +s++pr+YYrCt++   gC+++k+v++++++p +  +tY g+H++
  NNU_004768-RA 132 DDGRAWRKYGQKVILNSKYPRNYYRCTHKndqGCQATKQVQQTEDNPPMYRTTYIGDHTC 191
                    8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-26119191IPR003657WRKY domain
SuperFamilySSF1182903.14E-25124191IPR003657WRKY domain
PROSITE profilePS5081120.599126189IPR003657WRKY domain
SMARTSM007741.3E-37131193IPR003657WRKY domain
PfamPF031064.1E-25132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGTVESPWPE NSPINRRKAI NELVRGREFT TQLQIILRNP LGGHGSVSAE DLLPKILTSF  60
TEAIAALNTT VESGEVSQNP ASTHVSSPSC GDRATEDSGE SKKSTVLKDR RGSYKRRKLL  120
QTWTKLSATP IDDGRAWRKY GQKVILNSKY PRNYYRCTHK NDQGCQATKQ VQQTEDNPPM  180
YRTTYIGDHT CIDMSKAPRF LLDSIHNNAF VLSFEPEAPR KQDQPHPFFS CFSPSIKQEC  240
KEVEIPSDPT HKQCSSEYHL SHDEITFGSS CPTTVLPSTP GSDHGDVISG VYSGSTSSRS  300
LDNYFVGMSD FDDVFHFEED IFQVSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23131191868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252044.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U7ZK610.0A0A1U7ZK61_NELNU; probable WRKY transcription factor 70
STRINGXP_010252044.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-47WRKY DNA-binding protein 70