PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004769-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 355aa    MW: 38981.6 Da    PI: 5.2599
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004769-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.32.7e-07164179217
                    --SS-EEEEEEE--TT CS
           WRKY   2 dDgynWrKYGqKevkg 17 
                    dDgy+WrKYGqKe+ +
  NNU_004769-RA 164 DDGYTWRKYGQKEILE 179
                    8************965 PP
2WRKY46.38.2e-151982411959
                    SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  19 efprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++ rsYYrCt++   gC +kk+v+r ++dpk++ei+Y g H+++
  NNU_004769-RA 198 PYCRSYYRCTHKnfyGCDAKKQVQRLDDDPKTFEIIYYGVHTCH 241
                    689********99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-22159242IPR003657WRKY domain
SuperFamilySSF1182905.49E-17160242IPR003657WRKY domain
SMARTSM007742.3E-28163242IPR003657WRKY domain
PROSITE profilePS5081114.056164243IPR003657WRKY domain
PfamPF031062.9E-19164241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNVFKSATGR LRSHNNPSSN SQTTFNREPQ PSAIDAAVQE LIGTGYTQAM DLLQAQLLAD  60
HDRKPFDALV FPGSRTTTTT EMSGLGLEIP VATSGVNVIG LGATHTDGAE GSSLSKSGGE  120
FQLVPEGSNS GKSRAVQRSR KRKDGSETKY EAAPLMGNTE IPPDDGYTWR KYGQKEILEM  180
KGWMRSESEL LRSFLLVPYC RSYYRCTHKN FYGCDAKKQV QRLDDDPKTF EIIYYGVHTC  240
HMSSTAPSAR PSADIDREVL ESTKPSPSSS LSIPLSRWLS MDLEETTSGK GTNIPMDLQV  300
TTMYRDFDMG SSGAVVPDGQ HAAPECPVVD LADAMFNSRT FSNILDFIFP SIDEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15164240968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252412.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A1U7ZFC50.0A0A1U7ZFC5_NELNU; WRKY transcription factor 55
STRINGXP_010252412.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-33WRKY DNA-binding protein 55