PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004779-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 922aa MW: 100407 Da PI: 7.0139

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004779-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.2	3e-18	332	431	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l NNU_004779-RA 332 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDAKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFSRID-PEGKL 425 99************************555566778***********99899999999.*******************987.77777 PP EEEEE- CS B3 93 vvkvfr 98 v+++++ NNU_004779-RA 426 VMGFRK 431 777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-30	324	439	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.94E-20	329	432	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.67E-22	330	431	No hit	No description
PROSITE profile	PS50863	11.053	332	433	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-15	332	431	IPR003340	B3 DNA binding domain
SMART	SM01019	9.8E-21	332	432	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.771	592	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.8E-9	597	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MASKICMNAS CGATSSIEWR KGWGLRSGGF ANLCDKCGSA YDQLVFCDTF HLNESGWREC 60 SSCGKRLHCG CIASKPALEL LDNGGVACIG CLKSSEFSSI PSDEKPYKFG DSPMDIIGEP 120 RSTSVDNKID AEGVDKVKLI YFGKGVEGNG LNSLLQSQKD ETIESLGQIK REQLMPPLGE 180 VGSSSFSNLN LASIGSSQVV KGDNTKETIG VKDVYSSLSQ TCLNITLGAP SGPSNIALPI 240 PSAVVEGREQ SKTPSPFQQG PRSRQLLPKP PKASLSGSLE ANKDMLPQIR VARPPAEGRG 300 RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP 360 ISQPEGLPLK IQDAKGKDWV FQFRFWPNNN SRMYVLEGVT PCIQSMKLQA GDTVTFSRID 420 PEGKLVMGFR KAANSAPMQD TQISALANGA LANETFFSGV IENLPIISGY SGLLQSLKGR 480 TVPHLNALSE HLSSADGDIN WHKTEKHGSR TNEGPALQPM KRSRNIGSKS KRLLIDSEDA 540 LELKLTWEEA QDLLRPPPSV KPSIVMIEDH VFEEYEEPPV FGKRTIFTAQ PSGKLDQWTQ 600 CDNCSKWRRL PVDALLPPKW TCVDNVWDTD RCSCSAPNEM SPKELENLLR LNMDLKKRRI 660 LASQKPSQER EPSGLDALAT AAVLGDNGGD SGPPSVATTT KHPRHRPGCT CIVCIQPPSG 720 KGPKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRKQHIWGPK DETEVENTSK 780 GVLLQLDATD SENRQANESG SVGGQTRILM EKAGENSKAQ IDLNCQPDRE EEQQAGSTRV 840 SMMSLLQVAS LPLETYLKQN GLTSLVSEQQ ASSSSHVVPQ ATGGGESEGQ RPEEGCFASG 900 VRESGGDEEC IEPDQAKSDA VA

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MASKICMNAS CGATSSIEWR KGWGLRSGGF ANLCDKCGSA YDQLVFCDTF HLNESGWREC  60
SSCGKRLHCG CIASKPALEL LDNGGVACIG CLKSSEFSSI PSDEKPYKFG DSPMDIIGEP  120
RSTSVDNKID AEGVDKVKLI YFGKGVEGNG LNSLLQSQKD ETIESLGQIK REQLMPPLGE  180
VGSSSFSNLN LASIGSSQVV KGDNTKETIG VKDVYSSLSQ TCLNITLGAP SGPSNIALPI  240
PSAVVEGREQ SKTPSPFQQG PRSRQLLPKP PKASLSGSLE ANKDMLPQIR VARPPAEGRG  300
RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP  360
ISQPEGLPLK IQDAKGKDWV FQFRFWPNNN SRMYVLEGVT PCIQSMKLQA GDTVTFSRID  420
PEGKLVMGFR KAANSAPMQD TQISALANGA LANETFFSGV IENLPIISGY SGLLQSLKGR  480
TVPHLNALSE HLSSADGDIN WHKTEKHGSR TNEGPALQPM KRSRNIGSKS KRLLIDSEDA  540
LELKLTWEEA QDLLRPPPSV KPSIVMIEDH VFEEYEEPPV FGKRTIFTAQ PSGKLDQWTQ  600
CDNCSKWRRL PVDALLPPKW TCVDNVWDTD RCSCSAPNEM SPKELENLLR LNMDLKKRRI  660
LASQKPSQER EPSGLDALAT AAVLGDNGGD SGPPSVATTT KHPRHRPGCT CIVCIQPPSG  720
KGPKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QRKQHIWGPK DETEVENTSK  780
GVLLQLDATD SENRQANESG SVGGQTRILM EKAGENSKAQ IDLNCQPDRE EEQQAGSTRV  840
SMMSLLQVAS LPLETYLKQN GLTSLVSEQQ ASSSSHVVPQ ATGGGESEGQ RPEEGCFASG  900
VRESGGDEEC IEPDQAKSDA VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-69	310	439	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	737	748	KRRFKTLMMRKK
2	737	750	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252057.1	0.0	PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1U7ZGF6	0.0	A0A1U7ZGF6_NELNU; B3 domain-containing protein Os07g0679700-like isoform X1
STRING	XP_010252057.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]