PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004852-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 288aa MW: 31726.2 Da PI: 8.9162

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004852-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.2	2.1e-42	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh+vCe hsk+p+v+v+gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ NNU_004852-RA 182 QCQVEGCNLDLTSAKDYHRRHRVCESHSKSPKVIVAGLERRFCQQCSRFHDLSEFDEKKRSCRRRLSDHNARRRKSQP 259 5**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-35	176	244	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.206	180	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.55E-40	181	262	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-32	183	256	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRTSVMEWNP KTPSQWDWDN LVMFNGKASD IPKQVQPTDW GIEGDGGIDN GSVYSSAGGG 60 CSGSDLGHGS SSKSSISASV DSSLKGGIKI SNFNFEAAED FPKDFSKKKE FPRLEDTGTS 120 PTLGASVGSS EPVIGLKLGK RTYFEDICAG STIKNSFSVI PTSSSTTAKR SRASYQSTQT 180 PQCQVEGCNL DLTSAKDYHR RHRVCESHSK SPKVIVAGLE RRFCQQCSRF HDLSEFDEKK 240 RSCRRRLSDH NARRRKSQPE AIQFNSARLS SSFYGTIFSS DFLNHFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	183	256	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252163.1	0.0	PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
Refseq	XP_010252164.1	0.0	PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
Swissprot	A2YGR5	1e-78	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	1e-78	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1U7ZKG8	0.0	A0A1U7ZKG8_NELNU; squamosa promoter-binding-like protein 3 isoform X1
STRING	XP_010252163.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-68	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]