PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004917-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family DBB
Protein Properties Length: 205aa    MW: 22108.8 Da    PI: 6.3712
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004917-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06446541
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                    C+ +e+ e+   C  ++  lC  C ++ H        H++ p
  NNU_004917-RA  4 QCDVCEKVEAAVLCCADEAALCWGCDEKVHAAnklagkHQRLP 46
                   7******99*********************6678888888877 PP
2zf-B_box29.61.4e-095586435
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                   + C+ ++ek   +fC +++ llC++C +++H 
  NNU_004917-RA 55 PSCDICQEKVGYFFCLEDRALLCRQCDVSIHT 86
                   78***************************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
CDDcd000211.43E-5347No hitNo description
SMARTSM003365.7E-8447IPR000315B-box-type zinc finger
SMARTSM003362.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445299IPR000315B-box-type zinc finger
PfamPF006431.6E-75595IPR000315B-box-type zinc finger
CDDcd000219.23E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKIQCDVCEK VEAAVLCCAD EAALCWGCDE KVHAANKLAG KHQRLPLLNP SSHVPSCDIC  60
QEKVGYFFCL EDRALLCRQC DVSIHTVSPY VSSHQRFLVT GVKVALQHSS NSDNINSNGN  120
SSNGGNYHLS PPTSNASSAD LPTNKKVRLS LTRSVSTSAS TPASLSDEPT LAIRPNWPLD  180
EILNSSDYDC CYGFSDLGSS RIGSQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252302.11e-150PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM22e-58BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1U7ZTP11e-149A0A1U7ZTP1_NELNU; B-box zinc finger protein 22
STRINGXP_010252302.11e-150(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-59light-regulated zinc finger protein 1