PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004940-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 359aa MW: 40739.5 Da PI: 8.1482

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004940-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.9e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeel+++yLkkk++ +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + NNU_004940-RA 8 VPPGFRFHPTDEELLHYYLKKKISFQKFDL-EVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIR 102 69**************************.99**********963433332556********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+k+dW+mheyrle NNU_004940-RA 103 N-SYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 137 9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	8	159	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDLEVI REVDLNKMEP WDLQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR 120 APHGQKSDWI MHEYRLEDSD DVQGNSTEDG WVVCRVFKKK NLFKVGNEGG SSMGSEHQLN 180 NTLGNNQPRA LTLRDTQQYL RRQHEHGQSF DLYNKPELGL HYSHIPVPPY STMQSQTLLP 240 GSHRAVGYDF SPLPSESPVM AAKNLLSNPR ECDSGGSESL AGQVHYQAQA CEGGLEVGTC 300 EPAQQGLNDW AMLDRLVTSH LGQEDSSKGV RFGDANPSSV HQINQLSLRG EMDFWGYGK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDLEVI REVDLNKMEP WDLQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR  120
APHGQKSDWI MHEYRLEDSD DVQGNSTEDG WVVCRVFKKK NLFKVGNEGG SSMGSEHQLN  180
NTLGNNQPRA LTLRDTQQYL RRQHEHGQSF DLYNKPELGL HYSHIPVPPY STMQSQTLLP  240
GSHRAVGYDF SPLPSESPVM AAKNLLSNPR ECDSGGSESL AGQVHYQAQA CEGGLEVGTC  300
EPAQQGLNDW AMLDRLVTSH LGQEDSSKGV RFGDANPSSV HQINQLSLRG EMDFWGYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
4dul_A	1e-52	8	161	17	167	NAC domain-containing protein 19
4dul_B	1e-52	8	161	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252331.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-155	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1U7ZH59	0.0	A0A1U7ZH59_NELNU; protein BEARSKIN2-like
STRING	XP_010252331.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-157	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]