PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004947-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 528aa    MW: 58520.7 Da    PI: 6.9091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004947-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13382428455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  NNU_004947-RA 382 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 428
                    799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-5148240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-14381432No hitNo description
SuperFamilySSF474593.79E-18381445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10382428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGDKFWGSEE EKAIAEAVLG AEACQFLTLP APRHVSQDLV LPAVEGGMQR QLSQLVEGLG  60
WTYAIFWRAS RSKSGEMTLV WGDGHCREPK GGEREGGREG KGSYGDFESH KRVGGEQEQE  120
MRKRVLQKLH AFFGGSEDDN YAVRLDSVSD VEMFYLTSMY YSFPYDSQAA PARSFASSRS  180
IWASDAKSCS DNYHSRSFLA RSVGFRTMVC VPIESGVVEL GSVKSFPEDH NVLQRIKNVF  240
GGSRSVQATV TPKIFGQDLN LGGTKSRSVN ISFSPKVEED EGLPSESYKV QATVSRPGNT  300
LVLNAETSSN RTFGTFSNGC GSEGNEVKLF PQTSQMVMGG LTPQSRVSGL EEIKDDPLPR  360
PDERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  420
ITYITDLQMK IRVLETEREM VDGNQNPSII PEIDVQTRHE DTVVRVSCPL DAHPVSGVIK  480
AFRETQVMVQ DSKVSTTDDG SVLHTFSIRT QNGASEHLKE KLVAALSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-28376438264Transcription factor MYC2
5gnj_B8e-28376438264Transcription factor MYC2
5gnj_E8e-28376438264Transcription factor MYC2
5gnj_F8e-28376438264Transcription factor MYC2
5gnj_G8e-28376438264Transcription factor MYC2
5gnj_I8e-28376438264Transcription factor MYC2
5gnj_M8e-28376438264Transcription factor MYC2
5gnj_N8e-28376438264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363371RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252341.10.0PREDICTED: transcription factor bHLH3
RefseqXP_010252342.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-179MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A1U7ZH690.0A0A1U7ZH69_NELNU; transcription factor bHLH3
STRINGXP_010252341.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-147bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]