PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005047-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 209aa    MW: 24392.7 Da    PI: 6.9246
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005047-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.7e-101371712155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yps++++  LA+++gL+++q+ +WF N+R ++
  NNU_005047-RA 137 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 171
                    579*****************************885 PP
2ELK40.36.4e-1491112122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK qLlrKYsgyLgsLkqEF+
  NNU_005047-RA  91 ELKGQLLRKYSGYLGSLKQEFL 112
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.8E-28556IPR005541KNOX2
PfamPF037911.2E-22855IPR005541KNOX2
PfamPF037891.1E-1091112IPR005539ELK domain
SMARTSM011881.2E-791112IPR005539ELK domain
PROSITE profilePS5121311.17491111IPR005539ELK domain
PROSITE profilePS5007112.73111174IPR001356Homeobox domain
SuperFamilySSF466896.42E-20113188IPR009057Homeodomain-like
SMARTSM003894.1E-13113178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-28116176IPR009057Homeodomain-like
CDDcd000862.30E-12123175No hitNo description
PfamPF059203.3E-17131170IPR008422Homeobox KN domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRTGRGCIG EDPALDQFME AYCEMLTKYE QELTKPFKEA MMFLSRIECQ FKALTVSSVD  60
SGCGEVDRNG SSEEDVDARN NYIDPQAEDK ELKGQLLRKY SGYLGSLKQE FLKKKKKGKL  120
PKEARQQLLD WWNRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEEMQF  180
VVMDAAHPHY YMDSVLSNPF PMDFTPTLL
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252527.11e-158PREDICTED: homeobox protein SBH1-like isoform X1
RefseqXP_019052740.11e-158PREDICTED: homeobox protein SBH1-like isoform X1
SwissprotO222991e-117LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A1U7ZU911e-157A0A1U7ZU91_NELNU; homeobox protein SBH1-like isoform X1
STRINGXP_010252527.11e-157(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-105KNOX/ELK homeobox transcription factor