PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005081-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 357aa    MW: 38574.5 Da    PI: 8.8358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005081-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.9e-10525727
                   SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                   ++f++tGtCk+G++Ck++H++
  NNU_005081-RA  5 QYFLKTGTCKFGATCKYHHPR 25
                   59*****************96 PP
2zf-CCCH38.42.1e-124870527
                   --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    C++++rtG Ck+G  CkF+H++
  NNU_005081-RA 48 SCPYYMRTGSCKFGVACKFHHPQ 70
                   6********************97 PP
3zf-CCCH39.21.1e-12198223227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG Ck+G++Ck++H++
  NNU_005081-RA 198 DQPECQYYMKTGSCKFGSTCKYHHPR 223
                    689*********************96 PP
4zf-CCCH31.92.3e-10243268126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +++++C f+  +G+Ck+G++Ck+ H+
  NNU_005081-RA 243 PGQAICTFYNLYGICKFGPTCKYDHP 268
                    5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.314126IPR000571Zinc finger, CCCH-type
SMARTSM003560.21325IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7525IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-64270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1084371IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-44570IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-104770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-54869IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089196224IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10198223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6199225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5202224IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173242270IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8244268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5245270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCSLQYFLKT GTCKFGATCK YHHPRDRHDA DQVLLNVLGL PMRQEEKSCP YYMRTGSCKF  60
GVACKFHHPQ PVTLGPALPG TGSAAYGSTG SSVAPPSGVP YVSGLPAWSL PRAPYISGPR  120
MEGPQAYMPV VLSPSQGIVP AQQGWNTYTS TMSPISSSSV LGSNLVYNSK PQAQGESGSS  180
GQVHLVSTSV TNFPERPDQP ECQYYMKTGS CKFGSTCKYH HPRERIAPLA TSTIGPLGLP  240
LRPGQAICTF YNLYGICKFG PTCKYDHPLA GYYNYGMGLP TLSIAAADPT SFPYQRSSPM  300
TRSSETSPSK SSRLPDRKPE VTSTKHQNSD TKPLEPQATS PTQTSPTSSE RPHDQSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A1U7ZHS10.0A0A1U7ZHS1_NELNU; zinc finger CCCH domain-containing protein 3
STRINGXP_010252578.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-74C3H family protein