PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005205-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 92aa MW: 10765.3 Da PI: 9.1219

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005205-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	6.8e-13	17	92	1	82
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 ffk++ + l +++l++p +f+ ++++k + +led+sg +W kl r++s++++l++GW +F ++ + +++f++F NNU_005205-RA 17 FFKIM--LSGLPTQQLWIPPNFTMHISKKAVG--RAILEDRSGYRWFTKL--RQTSSGTYLGEGWHDFSVDHFILDNEFLLF 92 88989..999999********777766555..69**********..*************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-14	9	92	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-15	10	92	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.406	15	92	IPR003340	B3 DNA binding domain
CDD	cd10017	8.42E-11	15	92	No hit	No description
Pfam	PF02362	7.9E-11	17	92	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MVKTSENSSC QDKKPYFFKI MLSGLPTQQL WIPPNFTMHI SKKAVGRAIL EDRSGYRWFT 60 KLRQTSSGTY LGEGWHDFSV DHFILDNEFL LF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266787.1	1e-50	PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X3
Refseq	XP_010266788.1	9e-51	PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X4
TrEMBL	A0A1U8AGN0	2e-49	A0A1U8AGN0_NELNU; B3 domain-containing protein Os01g0723500-like isoform X4
TrEMBL	A0A1U8AL94	2e-49	A0A1U8AL94_NELNU; B3 domain-containing protein Os01g0723500-like isoform X3
STRING	XP_010266779.1	2e-48	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	1e-10	B3 family protein