PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005288-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 414aa MW: 45901 Da PI: 6.7965

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005288-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	419.9	2.2e-128	1	413	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse.lykalppsetseknsseelaal............. 81 +++lL++cAe vs+++ a++lL+ ls+++sp+gd++ Rl++ ft+AL+ rl+r + ++ +++a ++++t++ +++ ++a+ NNU_005288-RA 1 MRQLLINCAELVSQSNSPSAHRLLSFLSTNSSPYGDSTDRLVHQFTRALSYRLNRhTLHSfVSSAATATATATATVTAGASAMtplsvadnttitr 96 589**************************************************43333133333444444444555555559******** PP GRAS 82 .........................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgs 149 +++++P+++fshltaNqaIlea+eg++ vHi+Dfdi+qG+QWp+L+qa+a+R+ ++pp++RiTg g+ NNU_005288-RA 97 piicggscsggggaaadsealqssyLSLNQITPFIRFSHLTANQAILEAIEGHQSVHILDFDIMQGVQWPPLMQAIAERSdpsNPPPTIRITGTGQ 192 **************999876444************************************************98888899***** PP GRAS 150 pesgskeeleetgerLakfAeelgvpfefnvlvakrledl...eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 + ++l++tg+rL++fA++lg++f+fn+l+ ++ +++ + ++ + p+E laVn+vl lhrll+++ + +L+++k ++Pkvv+v+ NNU_005288-RA 193 ----DLDALRRTGDRLQRFAHSLGLKFQFNPLLLNDPSSIalhLPPAIVLLPDEILAVNCVLFLHRLLRDDSRDAR---LFLRTIKAMNPKVVTVA 281 ....************************77755555111456788888************77776666...9************ PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 e+ea+hn++ Fl+rf++al++y+alfdslea+lp++s+er vE++++g+ei ++v++ g++rr+rhe++e+W e+l+++GF++vpls +a +qak NNU_005288-RA 282 EREANHNHPFFLQRFVDALDHYTALFDSLEATLPPNSRERLAVEQVWFGKEILDIVSADGDDRRQRHERFETWVEMLRSSGFSNVPLSPFALSQAK 377 ******************************************************************************************** PP GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 lllr ++ s+gy+++ ++sl+lgW+++pL+svS+W NNU_005288-RA 378 LLLRLHYpSEGYQLQILNDSLFLGWQNQPLFSVSSW 413 ********************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.163	1	393	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-126	1	413	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MRQLLINCAE LVSQSNSPSA HRLLSFLSTN SSPYGDSTDR LVHQFTRALS YRLNRHTLHS 60 FVSSAATATA TATATVTAGA SAMTPLSVAD NTTITRPIIC GGSCSGGGGA AADSEALQSS 120 YLSLNQITPF IRFSHLTANQ AILEAIEGHQ SVHILDFDIM QGVQWPPLMQ AIAERSDPSN 180 PPPTIRITGT GQDLDALRRT GDRLQRFAHS LGLKFQFNPL LLNDPSSIAL HLPPAIVLLP 240 DEILAVNCVL FLHRLLRDDS RDARLFLRTI KAMNPKVVTV AEREANHNHP FFLQRFVDAL 300 DHYTALFDSL EATLPPNSRE RLAVEQVWFG KEILDIVSAD GDDRRQRHER FETWVEMLRS 360 SGFSNVPLSP FALSQAKLLL RLHYPSEGYQ LQILNDSLFL GWQNQPLFSV SSWN

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MRQLLINCAE LVSQSNSPSA HRLLSFLSTN SSPYGDSTDR LVHQFTRALS YRLNRHTLHS  60
FVSSAATATA TATATVTAGA SAMTPLSVAD NTTITRPIIC GGSCSGGGGA AADSEALQSS  120
YLSLNQITPF IRFSHLTANQ AILEAIEGHQ SVHILDFDIM QGVQWPPLMQ AIAERSDPSN  180
PPPTIRITGT GQDLDALRRT GDRLQRFAHS LGLKFQFNPL LLNDPSSIAL HLPPAIVLLP  240
DEILAVNCVL FLHRLLRDDS RDARLFLRTI KAMNPKVVTV AEREANHNHP FFLQRFVDAL  300
DHYTALFDSL EATLPPNSRE RLAVEQVWFG KEILDIVSAD GDDRRQRHER FETWVEMLRS  360
SGFSNVPLSP FALSQAKLLL RLHYPSEGYQ LQILNDSLFL GWQNQPLFSV SSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-64	7	414	25	379	Protein SCARECROW
5b3h_A	1e-64	7	414	24	378	Protein SCARECROW
5b3h_D	1e-64	7	414	24	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252869.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-138	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1U7ZMC2	0.0	A0A1U7ZMC2_NELNU; scarecrow-like protein 18
STRING	XP_010252869.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-131	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]