PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005302-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 590aa    MW: 65646.1 Da    PI: 7.0901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005302-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-0580101223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C+ C+ksFs+   L  H+r+H
  NNU_005302-RA  80 VCKVCNKSFSSGRALGGHMRVH 101
                    6*******************99 PP
2zf-C2H212.50.00044141160221
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                    +C  CgksF++  +L  H+r
  NNU_005302-RA 141 TCLLCGKSFPSMKSLFGHMR 160
                    799****************8 PP
3zf-C2H214.10.00014415437123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+ksFs++  L  H ++H
  NNU_005302-RA 415 YKCTTCNKSFSTHQALGGHRSSH 437
                    9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.46879106IPR007087Zinc finger, C2H2
SMARTSM003550.02779101IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-880101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.22E-780101No hitNo description
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-481104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.22E-7135162No hitNo description
PROSITE profilePS501579.972140167IPR007087Zinc finger, C2H2
SMARTSM003550.012140162IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-7142164IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
PfamPF139126.0E-9414438IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-8414437No hitNo description
PROSITE profilePS5015710.99415442IPR007087Zinc finger, C2H2
SMARTSM003550.02415437IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280417437IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-8498525No hitNo description
PfamPF139124.4E-11503526IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536503525IPR007087Zinc finger, C2H2
SMARTSM003550.11503525IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280505525IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDDENNHKSW NRIRNQRVLL QEQEESSGPG SSSMEKSGFE DSEELTKKSG LRIKLKVGTS  60
NQYSGEESDH DQSSVKEKRV CKVCNKSFSS GRALGGHMRV HAQEQDGGFG VGPVTKNLHN  120
SKQLKDHQLL HRSNVNSNST TCLLCGKSFP SMKSLFGHMR CHPDREWRGI RPPPSATIKN  180
SSSSTVSDAV APPKVDDQID SAATTTITTT ETEYLTLDLA QSLRSWSLTA KRGRKSLVQT  240
RSIDPPLSDA AYDLLALSNK QSGHGIIEAL DRDSSSKKKV KTEDGNRVTK NLSLKTLKQQ  300
IKEEPQLEER DLLSKKLKLN ERGLPMRRKD EPENGVGPDS LSVNSSWEYR DGFGEESNDN  360
CEDEEEEEEK HQFTHISGAH RHKHKKKKMK TIKLKDLETV QSVSPMPVVY CGSRYKCTTC  420
NKSFSTHQAL GGHRSSHNKG NKFLLVADTE DYSEFAADAS AAEEEQQLLG AALSQTQVDS  480
SPPPTPPEMT EVEESRSTVI TMHQCKICNK KFATGQALGG HKRCHWISPA VAAPCSSSSV  540
ASPEQDNKKM GRKMFDFDLN ELPVVEDEEI PESVYDGNFL NDHSCDWGKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252897.10.0PREDICTED: uncharacterized protein LOC104594341
TrEMBLA0A1U7ZGL80.0A0A1U7ZGL8_NELNU; uncharacterized protein LOC104594341
STRINGXP_010252897.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.19e-20C2H2 family protein