PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005315-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 313aa MW: 34025.4 Da PI: 10.0107

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005315-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	55	109	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+av++LGG++kAtPk +l++m+v gLt hvkSHLQkYRl NNU_005315-RA 55 RQRLRWTHELHERFVDAVAKLGGPDKATPKGVLRAMGVLGLTTFHVKSHLQKYRL 109 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.74	52	112	IPR017930	Myb domain
SuperFamily	SSF46689	7.88E-17	53	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-30	54	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	56	110	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-9	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MHQPKSTSSS SLVRSNALLP RQHLNSTDSA MGSSSRGSII ETSNSSKNSP ILSTRQRLRW 60 THELHERFVD AVAKLGGPDK ATPKGVLRAM GVLGLTTFHV KSHLQKYRLA THHPELHGKM 120 GREARALVQL TEGSSKTDTL KVPTMALHWC TSSQIQKMDT LKLQAEVQKR LHEQLEASLF 180 KFVTGIFKVK FSLFPFVQRQ LEVGKEDNSK PPKITEEQKS SSDVLAEASG AVTSVPLLES 240 EKTEACTPSP TASDSAPTSN SPNQELETPA QVDASKEHPQ AKNASASKSS SPGESSGERV 300 VKKQRVSEGP ECA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	55	112	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	55	112	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	55	112	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	55	112	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	55	112	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252926.1	1e-171	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_010252928.1	1e-171	PREDICTED: myb family transcription factor PHL7-like
TrEMBL	A0A1U7ZWP1	1e-170	A0A1U7ZWP1_NELNU; myb family transcription factor PHL7-like
STRING	XP_010252926.1	1e-171	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-44	G2-like family protein