PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005317-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 310aa MW: 34035.4 Da PI: 6.7343

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005317-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl NNU_005317-RA 36 KPRLRWTADLHERFVDAVTQLGGADKATPKSIMRTMGVKGLTLFHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-32	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.526	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	7.88E-17	36	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-24	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-16	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MFPGLIQPHE AVVPQEEIQG SNHRGDPCLV LTSDPKPRLR WTADLHERFV DAVTQLGGAD 60 KATPKSIMRT MGVKGLTLFH LKSHLQKYRL GKQSGKDLTE PSKDASYLLE SPHNGTSSPG 120 MSASDLNEGY EVKEALRAQM EVQRKLHLQV EAEKHLQICK DAERRYVESM LERACKLLAG 180 QTISCLVPDA EGHELPGSAP KASRTSSSHE PTRFYSLRPA EAIRVQVPEE EPPNLQPPRA 240 DCSTESCLTT NGSPAGLSLE SSPAGCKKRV RSLDTTDALI WSEASTRTQD IDATRIDPHV 300 ITGYGRLGEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	36	89	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252936.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X2
Swissprot	Q94A57	2e-73	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1U7ZIQ3	0.0	A0A1U7ZIQ3_NELNU; protein PHR1-LIKE 2-like isoform X2
STRING	XP_010252935.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-75	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]