PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005331-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 811aa    MW: 90988.1 Da    PI: 5.3958
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005331-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07748803147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      +++W +eE+e l+++v+++ +       W++I +        +Rt+ ++k++w + 
    NNU_005331-RA 748 KLPWKAEEEETLKKGVQMFSTTvnkniPWRKILEFGAnvfdGTRTPVDLKDKWKNI 803
                      689*****************************987669999************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.3E-9289341IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.15E-9289343IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002497.8E-7293338IPR001965Zinc finger, PHD-type
PROSITE patternPS013590294337IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.8E-9743807IPR009057Homeodomain-like
PROSITE profilePS512949.028743808IPR017930Myb domain
SuperFamilySSF466891.88E-8745804IPR009057Homeodomain-like
SMARTSM007177.1E-7747806IPR001005SANT/Myb domain
CDDcd116609.03E-12750805No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MKTKTRACKA TASKIPSKLC SVAARVLNKL LEGNQPTAIS LSERSELDED NGDDTRIPVD  60
GCDEGNEGVE RLNQCQAAKK LGRSIKNVDQ LTAGSLLERS KMAEDNEEDS RIPVVGCDEV  120
NDSIKGVKGS NECQADKRLK KSTENTDRPK VNLLADESNH QHETEPDNAD KLPSHGILAV  180
EINDESEHNT VPNNVGELNF TDDEANDKRQ FHTLVNDAIS PNCSILVDKA KDEGQPNTVP  240
ETSRCSDGYR GITPISTLSN KVDVTKQKLC LLNSQDLLTL DFVGATDGTE EGVCLKCAEG  300
GQVLMCSSND CPVVVHENCL GYPANFDNIG NFYCPFCLYK HVTVEFNEIK KKVYLAKKAL  360
CRFLGTNLSV RLDEIGKQVD TSITCHANNA RFREEEIIPE EDRLNTLLNK ANMHGNGTVE  420
NEADVSIEDT NSDGETHDVL TERKQDKPKM LKDNQHLTVE EQMPAESNTA GKRNVSSTTV  480
KHMQQMDHNL RNFVEDHLQK VTSIAQSGED LPCREDFPFL SDTFDKCSTK RKRNHSNTFE  540
GYRYIREAEQ KRHVKFCATS ENSNSPCEGT ICAVINDNDH LTEAEEQMQV KGNIEHKGSS  600
SLSKGEHEQK VDCQTKRNVE DQLKKEQSTA HYGDNDPNMV EEDHIREDER QPCEKANVWS  660
RNRILPCRDT ETLPSDSDRY SAQRIKKAIL QPQIYDQPEE PSLKASSLVD ENAEDQNRKA  720
IASNKSIKYQ RAANHSPSSS FSNSRRKKLP WKAEEEETLK KGVQMFSTTV NKNIPWRKIL  780
EFGANVFDGT RTPVDLKDKW KNIKKAKGKD E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252971.10.0PREDICTED: uncharacterized protein LOC104594379 isoform X3
TrEMBLA0A1U7ZVD60.0A0A1U7ZVD6_NELNU; uncharacterized protein LOC104594379 isoform X3
STRINGXP_010252969.10.0(Nelumbo nucifera)