PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005350-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 329aa    MW: 37056.9 Da    PI: 5.5712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005350-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-22133193259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    dDg +WrKYGqK++ + ++pr+YYrCt++   gC ++k+v++ ++dp    ++Y+g+H+++
  NNU_005350-RA 133 DDGRAWRKYGQKVILNCKYPRNYYRCTHKndqGCAATKQVQQIEDDPPKYRTIYKGQHTCK 193
                    8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-25119194IPR003657WRKY domain
SuperFamilySSF1182904.18E-24125193IPR003657WRKY domain
SMARTSM007745.3E-35132194IPR003657WRKY domain
PROSITE profilePS5081119.83132190IPR003657WRKY domain
PfamPF031061.9E-23133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDTTVESPWP GNFSIDRKRL INSLVRGREL TTQLQTILCN RLGHEDGSLS TEDLLPRILR  60
SFTEAISALK SADSGEVCQN PSSTNVSSPS CDGPRTEDSG ESRKSPAVKD RRGDYKRRKV  120
SETWTKITPT PIDDGRAWRK YGQKVILNCK YPRNYYRCTH KNDQGCAATK QVQQIEDDPP  180
KYRTIYKGQH TCKDISKPPQ FIMDSTHTDS SSFVLSFQSD SDAPITNQQQ LQEHHPFFSS  240
SFPPIIKQEC QEEIPNHEME ELTHNQQSSS QYFLPSVPTS ALPSTPGSDH GDVISGVYSC  300
STSSHSLDMS FVGDFDDVFH FDDDDFFPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21127193369OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253044.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U7ZGZ20.0A0A1U7ZGZ2_NELNU; probable WRKY transcription factor 70
STRINGXP_010253044.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-42WRKY DNA-binding protein 70