PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005378-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 352aa    MW: 39587.5 Da    PI: 6.1987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005378-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07293319228
                      SSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa 28 
                      +rW+  E+e l  av+++G g+Wk I 
    NNU_005378-RA 293 KRWSSLEEETLRAAVEKYGRGNWKFIL 319
                      79**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-6289320IPR009057Homeodomain-like
SuperFamilySSF466896.73E-8289331IPR009057Homeodomain-like
CDDcd116604.32E-9293330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MISGKAGLVS EQLKETLAQI EATKWSATGC QNVLNKDTRN DALRLLKIFL NEAREAMFPS  60
FLEFTAEKMN EMGLEKNDFS SVSIPDQVGL GQRAASSTLV PEGDKNSEMP INIPTEDGKK  120
VMLHSSSIAR MGVDTACNKY DCLPTPEVSK IQEALKSSTS DLQTLVKDPL LDALHIAETV  180
LSNTARENMN HKPSEENQDK VDAAVSSHDN EGIVEVQAKN SNIGNQSYQN MPRPSLMERN  240
STARTYEWDD AQDRPEGSSS HSEKVHLPSP KKRSLSPLKK YETMKFARRR KTKRWSSLEE  300
ETLRAAVEKY GRGNWKFILI SYRDVFEERT EEVDGAWLYC GYVQGHLYVG FK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290KKRSLSPLKKYETMKFARRRK
2287292RRRKTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253095.10.0PREDICTED: uncharacterized protein LOC104594499
TrEMBLA0A1U7ZX240.0A0A1U7ZX24_NELNU; uncharacterized protein LOC104594499
STRINGXP_010253095.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.13e-09TRF-like 7