PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005476-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ERF

Protein Properties

Length: 92aa MW: 10542.9 Da PI: 9.8418

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005476-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.7	9e-16	7	56	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+WvAeIr+p + r r +lg+f a eA a+ +a k+++g NNU_005476-RA 7 TYRGVRKRA-WGKWVAEIREP---N-RgSRLWLGTFSNALEASLAYNEATKAMYG 56 69**887.******8...3.35********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	19.704	7	64	IPR001471	AP2/ERF domain
SMART	SM00380	8.3E-28	7	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-19	7	65	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.8E-28	7	66	IPR001471	AP2/ERF domain
Pfam	PF00847	9.4E-10	7	56	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-9	8	19	IPR001471	AP2/ERF domain
CDD	cd00018	7.43E-25	8	66	No hit	No description
PRINTS	PR00367	5.4E-9	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MEPTLPTYRG VRKRAWGKWV AEIREPNRGS RLWLGTFSNA LEASLAYNEA TKAMYGRCVR 60 LNFPESSASM ESSYLATTSS SYSWRTELIL RE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-15	8	64	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-15	8	64	6	63	ATERF1
3gcc_A	2e-15	8	64	6	63	ATERF1
5wx9_A	2e-15	8	65	15	73	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257031.1	1e-29	PREDICTED: dehydration-responsive element-binding protein 2C-like
Refseq	XP_010264771.1	9e-30	PREDICTED: dehydration-responsive element-binding protein 2A
Swissprot	Q8LFR2	9e-27	DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBL	Q9LEM7	2e-30	Q9LEM7_CATRO; AP2-domain DNA-binding protein
STRING	XP_010257031.1	6e-29	(Nelumbo nucifera)
STRING	XP_010264771.1	3e-29	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	5e-28	DRE-binding protein 2A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]