PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005481-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 177aa    MW: 19530.7 Da    PI: 8.9604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005481-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134365123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  NNU_005481-RA 43 FECKTCNRKFPSFQALGGHRASH 65
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-841114No hitNo description
PfamPF139121.6E-124267IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274370IPR007087Zinc finger, C2H2
SMARTSM003550.154365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139125.5E-1091116IPR007087Zinc finger, C2H2
PROSITE profilePS501578.95492119IPR007087Zinc finger, C2H2
SMARTSM003550.592114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLNEQAMKRS RVEGEIDNIT MANCLMLLSR GGEADSMAPH RVFECKTCNR KFPSFQALGG  60
HRASHKKPRL MGADDPNHQA QLHNLQVKPK THECSICGLE FAIGQALGGH MRRHRSALSE  120
GLLSPPPPPP APQVPAVLKR SSSSRRVLCL DLNLTPLEND LDLQLGRKMP PVVDCFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253292.11e-128PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD46e-45ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1U7ZJI31e-126A0A1U7ZJI3_NELNU; zinc finger protein ZAT12-like
STRINGXP_010253292.11e-127(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-40C2H2 family protein