PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005564-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 218aa    MW: 25189.6 Da    PI: 8.7929
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005564-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-213494257
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  NNU_005564-RA 34 STRWCPTPEQLMILEEMYRGgIRTPNATQIQQITAHLsfygKIEGKNVFYWFQNHKARERQ 94
                   58*****************99**************************************97 PP
2Wus_type_Homeobox121.63.2e-393395264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+ G+rtPn+ +iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
      NNU_005564-RA 33 ASTRWCPTPEQLMILEEMYRGGIRTPNATQIQQITAHLSFYGKIEGKNVFYWFQNHKARERQK 95
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.0423095IPR001356Homeobox domain
SMARTSM003894.2E-43299IPR001356Homeobox domain
CDDcd000861.36E-43595No hitNo description
SuperFamilySSF466892.57E-113595IPR009057Homeodomain-like
PfamPF000461.4E-183594IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-73694IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYCFYHSIHL FISHQTPKRR GGVRPLEEMS PAASTRWCPT PEQLMILEEM YRGGIRTPNA  60
TQIQQITAHL SFYGKIEGKN VFYWFQNHKA RERQKLRRKL SRQQQQQQQQ QYPHHHFLHQ  120
IDPSDAAAAA LQQIPLYNST QIVPQIGGLK ESSSNDDIER STRMYGRDWM MMMMDVGPAT  180
PCCNRPLKTL QLFPITTSSS LKDECTTSDH LSCSTSSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253422.11e-142PREDICTED: WUSCHEL-related homeobox 3A
TrEMBLA0A1U7ZNQ61e-141A0A1U7ZNQ6_NELNU; WUSCHEL-related homeobox 3A
STRINGXP_010253422.11e-141(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-45WOX family protein