PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005586-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 225aa MW: 26058.9 Da PI: 9.1021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005586-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff G+C G +CkF+H+ NNU_005586-RA 90 KSILCEFFKV-GQCTKGFKCKFSHD 113 67799999.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-6	88	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.953	88	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-4	88	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	90	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	158	195	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.216	158	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MPPKQPSKAE IAKKQKIVED KTFGLKNKNK SKNVQKYVQS LQQAVQPKSD PSKVAAKKKK 60 EEDKAREKEL NDLFKIAVSQ PKVPVGVDPK SILCEFFKVG QCTKGFKCKF SHDLNVQRKG 120 EKIDLYSDKR DQETMEDWDQ ETLEKVVESK KKEYNQNKPT EIVCKYFLEA VEKKQYGWFW 180 VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKISVEE EIEDQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253470.1	1e-164	PREDICTED: zinc finger CCCH domain-containing protein 11
Refseq	XP_010253471.1	1e-164	PREDICTED: zinc finger CCCH domain-containing protein 11
Swissprot	Q0JHZ2	1e-136	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A1U7ZJZ0	1e-162	A0A1U7ZJZ0_NELNU; zinc finger CCCH domain-containing protein 11
STRING	XP_010253470.1	1e-163	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-121	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]