PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005735-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-X1
Protein Properties Length: 424aa    MW: 47162.4 Da    PI: 7.9752
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005735-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1193e-06186204120
       zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                    CG H C  lCH+GpCp+Cp+
  NNU_005735-RA 186 CG-HNCFLLCHPGPCPSCPK 204
                    **.***************96 PP
2zf-NF-X121.45.2e-07238256119
       zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                    CG H+C ++CHeG CppC+
  NNU_005735-RA 238 CGVHRCLEICHEGTCPPCR 256
                    ******************8 PP
3zf-NF-X116.51.9e-05345364119
       zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                    CG H+C + CH+GpC + C+
  NNU_005735-RA 345 CGLHRCPERCHRGPCVEtCR 364
                    ***************99886 PP
4zf-NF-X118.34.9e-06398417120
       zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                    CG+H C + C+ G+CppC++
  NNU_005735-RA 398 CGRHACRRRCCDGDCPPCSE 417
                    ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.55E-566105No hitNo description
PROSITE profilePS500898.74269141IPR001841Zinc finger, RING-type
PROSITE patternPS01359069140IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF578502.55E-5134153No hitNo description
CDDcd060084.78E-6174222No hitNo description
SMARTSM004380.014186204IPR000967Zinc finger, NF-X1-type
PfamPF014229.7E-4186203IPR000967Zinc finger, NF-X1-type
CDDcd060081.19E-8228269No hitNo description
SMARTSM004380.005238257IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-5238256IPR000967Zinc finger, NF-X1-type
CDDcd060083.44E-7283324No hitNo description
SMARTSM004380.0015291310IPR000967Zinc finger, NF-X1-type
PfamPF014220.19291309IPR000967Zinc finger, NF-X1-type
CDDcd060083.93E-10335384No hitNo description
SMARTSM004380.24345365IPR000967Zinc finger, NF-X1-type
PfamPF014220.0012345364IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013398417IPR000967Zinc finger, NF-X1-type
PfamPF014223.7E-4398416IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASTTQRLSL SSDSDADSDN STGGVDELRH DDLSDTIFKS YLQISGQSSP DLSKIQTFLT  60
SSRSGALSCL ICLERIRTSD PTWSCINGCF AVFHLLCIQS WARQASDLAT ERAVARLSRE  120
LFPLAAAKAL ENSNWSCPKC RVEYSKSQIP RSYFCFCGKL ENPPSDPWIL PHSCGEICGR  180
PLRYNCGHNC FLLCHPGPCP SCPKLVKTRC FCGTVEDVRR CGFKNFSCNG VCSKVLDCGV  240
HRCLEICHEG TCPPCRARGV YRCRCGKTKE ERECFEREFR CENPCERMLG CGKHFCAEGC  300
HSDPCGECPL QGKRICPCGK KVYEGMSCDV VVPTCGLTCG KMLSCGLHRC PERCHRGPCV  360
ETCRNVTVKF CRCGSLKKEV PCYQDLACER KCQRVRDCGR HACRRRCCDG DCPPCSEVYV  420
TVLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253736.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1U7ZIL20.0A0A1U7ZIL2_NELNU; NF-X1-type zinc finger protein NFXL2
STRINGXP_010253736.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-156sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors