PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005785-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 272aa    MW: 30060.3 Da    PI: 7.7814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005785-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1371117354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+++E+rRR+riNs + +Lr+l+P +      K++Ka+ L  +++++k+L
  NNU_005785-RA  71 KSHSQAEKRRRERINSHLTTLRKLIPRS-----DKMDKAALLGSVIDHVKDL 117
                    79************************97.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.61268117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-1369123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-1271120No hitNo description
Gene3DG3DSA:4.10.280.102.2E-1471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1171117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1274123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MERCLYPGWP EEAHLLRYHA LNGGPFLLPW LPPPPPLLPS QAFTSFPAHG FPPSSLFVEG  60
MAEDRATAAS KSHSQAEKRR RERINSHLTT LRKLIPRSDK MDKAALLGSV IDHVKDLKRK  120
AVEVSQLFTV PTDVDEVIVD CDQSAESTTN TSSTTTTNSK DNHFIKASLC CDDRPELFTD  180
LNQALNGLRL TTVRAEMATL GGRVISVLLL CTKDCEEGVC LNSLKQSLNV VLNRIASASG  240
GSMNGRSSKR QRILLPSYYS QSYSDHHELC LV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253805.10.0PREDICTED: transcription factor bHLH51-like
TrEMBLA0A1U7ZKU70.0A0A1U7ZKU7_NELNU; transcription factor bHLH51-like
STRINGXP_010253805.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-43bHLH family protein