PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005786-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 254aa MW: 28653 Da PI: 7.0238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005786-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l ++v+q G+++W++I++ ++ gR++k+c++rw + NNU_005786-RA 12 KGSWSPDEDAKLTRLVEQNGPRNWSLISSGIP-GRSGKSCRLRWCNQ 57 799***************************.*********985 PP
2	Myb_DNA-binding	55.7	1.1e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ NNU_005786-RA 66 PFTPAEDAIIIKAHATHGNK-WATIARLLP-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.897	7	58	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-30	10	105	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-15	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-17	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	13	65	IPR009057	Homeodomain-like
CDD	cd00167	2.39E-13	14	56	No hit	No description
PROSITE profile	PS51294	24.746	59	113	IPR017930	Myb domain
SMART	SM00717	2.7E-15	63	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-11	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.6E-24	66	113	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-15	66	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVVGLNAGDR IKGSWSPDED AKLTRLVEQN GPRNWSLISS GIPGRSGKSC RLRWCNQLSP 60 LVQHRPFTPA EDAIIIKAHA THGNKWATIA RLLPGRTDNA IKNHWNSTLR RRLASESFSA 120 TSDPESESDS VRKRRCLRVS PENNSCNDDD DADEQRKAEP ATLLTLSPPG ESLGTAYGKV 180 EEEVVVKRDS EEREKERCTV EIKDMYLMNI VQRMIAEEVR NYIDKVRAKG ELALGFESGT 240 DQNTHNTWEL RNRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-37	11	113	3	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253806.1	0.0	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A1U7ZXE9	0.0	A0A1U7ZXE9_NELNU; transcription factor MYB44-like
STRING	XP_010253806.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-55	myb domain protein 77