PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005829-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 1396aa    MW: 154852 Da    PI: 7.5249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005829-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001113641390123
                     EEET..TTTEEESSHHHHHHHHHH..T CS
        zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                     ykC+   Cg +F+  s++ rH r+  H
  NNU_005829-RA 1364 YKCKvaGCGLTFRFVSDFSRHRRKtgH 1390
                     9**********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005456.0E-141555IPR003349JmjN domain
PROSITE profilePS5118313.1061657IPR003349JmjN domain
PfamPF023754.2E-141750IPR003349JmjN domain
SuperFamilySSF511971.29E-27290456No hitNo description
SMARTSM005582.5E-47290459IPR003347JmjC domain
PROSITE profilePS5118434.798293459IPR003347JmjC domain
PfamPF023738.3E-37323442IPR003347JmjC domain
SMARTSM003551812811303IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.07113041333IPR007087Zinc finger, C2H2
SMARTSM003550.1913041328IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.66E-513041341No hitNo description
Gene3DG3DSA:3.30.160.602.6E-413051332IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013061328IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-913331358IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001813341358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75913341363IPR007087Zinc finger, C2H2
PROSITE patternPS00028013361358IPR007087Zinc finger, C2H2
SuperFamilySSF576676.36E-1013441386No hitNo description
Gene3DG3DSA:3.30.160.603.7E-1013591387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.28413641395IPR007087Zinc finger, C2H2
SMARTSM003550.213641390IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013661390IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1396 aa     Download sequence    Send to blast
MGDVKIPNWL KGLPLAPEYH PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
IANLNRSLSR CPELASDVNS SAVCASSQLG GGDKGNDGEL RAVFTTRHQE LGQSMKKTKG  120
PPQVRQSAMQ RQVWQSGEVY TLEQFESKSK AFARNILGMC KEVSPLLIEA LFWKAASEKP  180
IYVEYANDVP GSGFGEPKEP FRYFHKRSKK RKFDKKVQGI PNCENQVVDN ISNSNKDIEK  240
DTFVNNDSIP SSESSKPSSS SNLSSDEGSK FFRQKSLSAS CDREGTAGWK LSNSPWNLQV  300
IARSPGSLTR FMPDDIPGVT SPMVYIGMLF SWFAWHVEDH ELHSLNFLHT GSPKTWYAVP  360
GDYAFTFEEV VRAQGYGGNL DRLAALALLG EKTTLLSPEV VVSSGIPCCR VVQHPGEFVV  420
TFPRAYHVGF SHGFNCGEAA NFGTPQWLKV AKEAAVRRAA MNYLPMLSHQ QLLYLLTMSF  480
VSRVPRSLLP GARSSRLRDR QKEERELLVK KAFIDDMLTE NNLLSNLLGK GSTYHAVLWD  540
PESLPSPCKD SQSFPLPTFP DASSLLIDER NMETCNNEKK IFHPENVLHD GLDSVGTTSS  600
RKLLPIGTNN DDCCDSVVDQ TKLNMDTSDN LYAEDADLPY GLHVDSETLA CVACGILGFP  660
FMSVVQPSEK AFEKFFHADC QSSQEGTTLN SEKSFSSSYM DVSCNGSASD FMAGPSISKS  720
GSLQMFASGK VSKLWNTSNK FLRPRVFCLE HTLEIKKLLL SKGGVNVLII CHSDYPKIKA  780
HATAIADEIG VPFNYKDIPL EHASQEDLNL INISIDDGQE ECGEDWTSKI GLNLRYCVKL  840
RKASLSNQEQ HARALGGLFS DIIPGSRLSG LKWQCRRSRT HHKGIGPNQA KSCENVQVEK  900
SDAADALVGK PDDSKVATEN KIIQYSRRSS NGKTGNPVGA NRPCGYLRKP LLGEVAMVNN  960
EDSDVNSKKS SEDNSCGAEK QENDLGQSSI FVIHNDNIHH KIQTTEETRK MSVISDPSQS  1020
AGLHAIAVPA FGTAEAQADK TVKTDIEGKA CNLVTQDGSE EHDMQFTNEI NKMNEFSTHP  1080
NFPRSLSVAI STDRIYETNM DDGILGETNE KAESHNYSTL DKSEMQQVIQ TVNGTNKDPE  1140
GYNDGNSTTD QCIHPIPILE SSGVPEEIQD TEGLCIGPDD HSSHNRMELE AADSSILDTK  1200
LNKKVGNKRR REVEKITGQC LEGFIRSPCE GLRPRAGRGA TSGPGTRINT RVEKAVVKKI  1260
KRRLDGDTAS KQNKDETNRV HKCDFEGCHM SFKVKADLLV HKRNRCPHQG CGKQFSSHKY  1320
AMLHQRVHVE DRPLKCPWKG CKMSFKWAWA RTEHLRVHTG ERPYKCKVAG CGLTFRFVSD  1380
FSRHRRKTGH YMNLPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A5e-56273473137346Transcription factor jumonji (Jmj) family protein
6ip4_A5e-56273473137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112561263VKKIKRRL
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253924.10.0PREDICTED: probable lysine-specific demethylase ELF6 isoform X1
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A1U7ZJ060.0A0A1U7ZJ06_NELNU; probable lysine-specific demethylase ELF6 isoform X1
STRINGXP_010253924.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]