PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_005859-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 827aa MW: 91434.7 Da PI: 7.1295

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005859-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + q++++++ + NNU_005859-RA 52 AWTRQEEESFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 94 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-9	43	99	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.588	48	99	IPR017884	SANT domain
SMART	SM00717	2.0E-4	49	97	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	50	97	IPR009057	Homeodomain-like
CDD	cd00167	9.38E-5	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MHSKPQVALE CATSLPSENP LLKDGDSCLT SSSQNIVAPQ QPVKKQTRQW AAWTRQEEES 60 FFNALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLSPGFSLDA KNSKDTIAAM 120 LRWWSLLEKY SCKASKLHLK PRRLKLFVEA LEHQLLKDRK KSIRKRPSQG EYCSSASPTA 180 VLLQNKAPGL DTRSVKLVAV DNQSIQKVVS GKGSALKRNV NTGINRSNNK CHSSTSKTGR 240 QRRKTGASPA AYKRWEKAAM AGVSLVADAA EHLERSTTNK KDCTEEGTLI KPFPGPVDPA 300 NAQKGDPVGV RPPLSMSTSV QQLTDSGAQQ SLKLKLQLFP IDEVTRRALE KDEHNPHLEL 360 TLSARKKISS VLEHLNRKWG NSGIASGDLI LFPYSVQREN LMGYPRWKQD TVASAADVYA 420 MIGSPPVFRL RYGWFSSTDL ESICRASSSY HIQEQHTSIN RSNIKESTDA TLPILSTCHH 480 SEHLLDCFKD RVTLMTESSL ILPLHADCCE DVIGCAEDQE ISLPVSSANS SWLKKEIGGG 540 IVKGQWEEMD NLRMSNNSTA LLAGEWADGL TNISIGDLLS EASRAADNNC VDPHSLGSSQ 600 YFQQIPFSCD SFDAAIAAHI AAHQEKLNLK SAQVSHATSL WDAEETRDAF SFQKMPTFDQ 660 EVRSPSQHAS FGTCKQISCT SSMSLRALIE ELPEVRPIDD SACEGDSVDD CQSDAYSPDN 720 SPKGLSPENS SKDLSPKNSA NDFSELTDIY WPDSLGPLDL DVPSSRCYKQ DLIFGDSVSF 780 SGLNRFLASS LDTFQNSLFG FDKKELPSTD EVGPNSSLSD DRIGGEV

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MHSKPQVALE CATSLPSENP LLKDGDSCLT SSSQNIVAPQ QPVKKQTRQW AAWTRQEEES  60
FFNALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLSPGFSLDA KNSKDTIAAM  120
LRWWSLLEKY SCKASKLHLK PRRLKLFVEA LEHQLLKDRK KSIRKRPSQG EYCSSASPTA  180
VLLQNKAPGL DTRSVKLVAV DNQSIQKVVS GKGSALKRNV NTGINRSNNK CHSSTSKTGR  240
QRRKTGASPA AYKRWEKAAM AGVSLVADAA EHLERSTTNK KDCTEEGTLI KPFPGPVDPA  300
NAQKGDPVGV RPPLSMSTSV QQLTDSGAQQ SLKLKLQLFP IDEVTRRALE KDEHNPHLEL  360
TLSARKKISS VLEHLNRKWG NSGIASGDLI LFPYSVQREN LMGYPRWKQD TVASAADVYA  420
MIGSPPVFRL RYGWFSSTDL ESICRASSSY HIQEQHTSIN RSNIKESTDA TLPILSTCHH  480
SEHLLDCFKD RVTLMTESSL ILPLHADCCE DVIGCAEDQE ISLPVSSANS SWLKKEIGGG  540
IVKGQWEEMD NLRMSNNSTA LLAGEWADGL TNISIGDLLS EASRAADNNC VDPHSLGSSQ  600
YFQQIPFSCD SFDAAIAAHI AAHQEKLNLK SAQVSHATSL WDAEETRDAF SFQKMPTFDQ  660
EVRSPSQHAS FGTCKQISCT SSMSLRALIE ELPEVRPIDD SACEGDSVDD CQSDAYSPDN  720
SPKGLSPENS SKDLSPKNSA NDFSELTDIY WPDSLGPLDL DVPSSRCYKQ DLIFGDSVSF  780
SGLNRFLASS LDTFQNSLFG FDKKELPSTD EVGPNSSLSD DRIGGEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253972.1	0.0	PREDICTED: TSL-kinase interacting protein 1-like isoform X1
TrEMBL	A0A1U7ZJ45	0.0	A0A1U7ZJ45_NELNU; TSL-kinase interacting protein 1-like isoform X1
STRING	XP_010253971.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.1	0.0	TSL-kinase interacting protein 1