PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005911-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 319aa    MW: 35101 Da    PI: 5.0169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005911-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000641862221455
                    HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  NNU_005911-RA 186 EKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 222
                    56678888888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.664172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-5184226No hitNo description
SuperFamilySSF474597.98E-10184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMITGSPN WWNINAMRPP AQQPSPLLPS PTSLFPQYAL PPPSSLPLTS  60
WPHDYQELPE SWSQLLLGGL VGEEDRSALG HFQAKKLENW EDQLLYQSPS SVPSVDVKQE  120
VSENGYVYGH GNEEFQSARS SWSQVMPASS PRSCVTSFSS NMLDFSNSKS DGKHQQPDHS  180
SEVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQSQIEALSS PYLGTGSGNM  240
GQQQSVQGER NCIFPEDPGQ LLNDNCIKRR GTPEQDSEDE PKKDLRSRGL CLVPISCTLH  300
VGSDNGADYW APSLGGGFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254048.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D13e-90BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1U7ZJB00.0A0A1U7ZJB0_NELNU; transcription factor bHLH68-like
STRINGXP_010254048.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]