PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005925-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CPP
Protein Properties Length: 521aa    MW: 56435.4 Da    PI: 6.754
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005925-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.64.6e-0731561642
            TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                   +YCeCfa+g +C+  C+C +C+N+ e+
  NNU_005925-RA 31 RYCECFASGIYCDG-CNCVNCCNNVEN 56
                   6*************.********9875 PP
2TCR51.12.6e-16101140140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  NNU_005925-RA 101 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 140
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.02821141IPR005172CRC domain
PfamPF036382.8E-43153IPR005172CRC domain
SMARTSM011140.0393156IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011148.4E-20101142IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13104139IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MQLQKFTVFK IRNGLLNHVI DMKLIWQYMI RYCECFASGI YCDGCNCVNC CNNVENEVAR  60
QEAVEVTLER NPNAFRPKIA SSPHGTRDDR EDAGEVPMVG KHNKGCHCKK SGCLKKYCEC  120
FQANILCSEN CKCMDCKNFE GSEERRALFH GDHGNAMAYI QQAANAAITG AIGSPPASKK  180
RKSQDLFFCT TAKDLSVHRL AQFPQGNHPK ASIPSSSLSS IPVARVVNTA VLGSSKSAYR  240
SLLADIIQPQ DVKELCTLLV VVSGEAAKTL SEKRGMTEEQ VDREDQLESS HASSIHSKED  300
NRKESELNKT VVDDRSSGTQ PDKMGTDDSG SDGADMQKGR PMSPGTLALM CDEQDSMFMA  360
APSLNGAMAH GHNIPPQSSF GQGMTEVYAE QERLILTGFR DYLRRLTACA SIKETNCSSL  420
ARTTEAGSQQ EPATNGTVKA PVSANAETSQ LMSAITTAKA PIPSSAETSQ TVGPVNCNPN  480
NGVSTPQTII AVSTSNNKVQ AKDRQSSENG NIKPKIETED V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-263215025132Protein lin-54 homolog
5fd3_B4e-263215025132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254065.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-160TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7ZLF50.0A0A1U7ZLF5_NELNU; protein tesmin/TSO1-like CXC 5 isoform X2
STRINGXP_010254064.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-136Tesmin/TSO1-like CXC domain-containing protein