PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005977-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 335aa    MW: 38130.9 Da    PI: 5.4048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005977-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1899149155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a+k+++g
  NNU_005977-RA  99 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSTALEAALAYDKAAKAMYG 149
                    56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1399149IPR001471AP2/ERF domain
CDDcd000187.82E-3299157No hitNo description
PROSITE profilePS5103221.997100157IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-31100159IPR001471AP2/ERF domain
SMARTSM003808.5E-37100163IPR001471AP2/ERF domain
PRINTSPR003679.9E-10101112IPR001471AP2/ERF domain
PRINTSPR003679.9E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVEINICQDN SITVQEQEPE KKRKASLYCM SSLITEKKRK SRRRRKGCDS IAERLAKWKE  60
FNEKHDTAGD GAKRNRKAPA KGSRKGCMRG KGGPENLRCN YRGVRQRTWG KWVAEIREPN  120
RGSRLWLGTF STALEAALAY DKAAKAMYGR YARLNFPESS ASMESSYSAT TSSSYSEVCL  180
AEELKVNLPK VEPRPEQCES EIYMEAVAPA PMNIVKQEPK EESVEPMNPD QFRGYGITQG  240
PIDSGHLTQF SESGCNRFDD VQSFSLEELF DMEEPRMKNE YDQLGGSDQL LCGSPLDLSY  300
QLLNPIELEG DDGYGLYEYD EQRLLHLGFP DFLWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-18100157260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12139KRKASLYCMSSLITEKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254126.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR28e-52DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A1U7ZY730.0A0A1U7ZY73_NELNU; dehydration-responsive element-binding protein 2A-like
STRINGXP_010254126.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.15e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]