PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006109-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

CPP

Protein Properties

Length: 682aa MW: 75337.6 Da PI: 8.6191

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006109-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.7	1.5e-15	271	309	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCk+skClk+YCeCfaag++C+e C C +C+Nk e NNU_006109-RA 271 CKRCNCKRSKCLKLYCECFAAGVYCAEPCACLECFNKPE 309 799*********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.2E-16	269	310	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	20.356	270	386	IPR005172	CRC domain
Pfam	PF03638	1.7E-11	272	307	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MLNLRLARPE LKAASQHQRG TLRRCLQFEI AEAQRNILGT SCCQNTQNVI TNPGLPANSK 60 DSEILVSSHH EPSTTSSIGR PVNLSQLISP NLSICATKNT EAHMEKVDKH VQNSENALMI 120 APKPSGIGLH LNSIVNSVAM GSGATASVNS TEKDRPSLLG MKSQSVINYH FPEDPNTSSH 180 STSTAENFSY NNDDRQESQA IVLASTVHTQ SPRIVKPMGN LKSKLIEHHT TPCDAKRSAP 240 ENANKLEELT IMRAFVFSRK RVSYTTENVG CKRCNCKRSK CLKLYCECFA AGVYCAEPCA 300 CLECFNKPEY EDTVLSTRQQ IESRNPLAFA PKIVCRVTEF PANSGSCAIM PSLNLFSLDM 360 SICLDIKAGV GCSEGCRCEG CKNVYGMKEG KDFKWKLCTK GLMKDGRMYL VRRWVWWKQE 420 VRFYIQSSVI HSTSHPSHHH SSAPSIHGKD ILRSRLPVRR YLPSPESDTT VLSSYGKSPL 480 SPVDSNNNER QQKMSVEIVD MISYDQDVDC LTSGEMDQFS PRWDGLVDMC DLTPKPHPPS 540 RAMVSSASSN SKDCKKVLRA QLCHRNGRLS AISSLRQSSP ITPVTQLGGS KFPQESDSDS 600 ALYGILEDDT PDILKDTPTP IKTVKASSPN QKRVSPPHSR LHELRSSSSP GLRSGRKFIL 660 QAVPSFPPLT PYSDPKSCSS EK

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MLNLRLARPE LKAASQHQRG TLRRCLQFEI AEAQRNILGT SCCQNTQNVI TNPGLPANSK  60
DSEILVSSHH EPSTTSSIGR PVNLSQLISP NLSICATKNT EAHMEKVDKH VQNSENALMI  120
APKPSGIGLH LNSIVNSVAM GSGATASVNS TEKDRPSLLG MKSQSVINYH FPEDPNTSSH  180
STSTAENFSY NNDDRQESQA IVLASTVHTQ SPRIVKPMGN LKSKLIEHHT TPCDAKRSAP  240
ENANKLEELT IMRAFVFSRK RVSYTTENVG CKRCNCKRSK CLKLYCECFA AGVYCAEPCA  300
CLECFNKPEY EDTVLSTRQQ IESRNPLAFA PKIVCRVTEF PANSGSCAIM PSLNLFSLDM  360
SICLDIKAGV GCSEGCRCEG CKNVYGMKEG KDFKWKLCTK GLMKDGRMYL VRRWVWWKQE  420
VRFYIQSSVI HSTSHPSHHH SSAPSIHGKD ILRSRLPVRR YLPSPESDTT VLSSYGKSPL  480
SPVDSNNNER QQKMSVEIVD MISYDQDVDC LTSGEMDQFS PRWDGLVDMC DLTPKPHPPS  540
RAMVSSASSN SKDCKKVLRA QLCHRNGRLS AISSLRQSSP ITPVTQLGGS KFPQESDSDS  600
ALYGILEDDT PDILKDTPTP IKTVKASSPN QKRVSPPHSR LHELRSSSSP GLRSGRKFIL  660
QAVPSFPPLT PYSDPKSCSS EK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254334.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 4
TrEMBL	A0A1U7ZYQ1	0.0	A0A1U7ZYQ1_NELNU; protein tesmin/TSO1-like CXC 4
STRING	XP_010254334.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	5e-41	Tesmin/TSO1-like CXC domain-containing protein