PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006122-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 647aa    MW: 70862.3 Da    PI: 8.4697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006122-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-12392416126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC++f + GtC+yG++C+FaHg
  NNU_006122-RA 392 FKTRLCSRFKA-GTCPYGSNCNFAHG 416
                    69*********.*************8 PP
2zf-CCCH19.12.4e-06456477425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    +lC+ f  + +C+yG+rC+F H
  NNU_006122-RA 456 KLCKKFCSGEECPYGERCNFLH 477
                    67888887559*********** PP
3zf-CCCH413.1e-13536562127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt++C+ +  tG+C++G++C+FaHg+
  NNU_006122-RA 536 WKTRICNKWETTGHCPFGEKCHFAHGQ 562
                    8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF512303.14E-6182257IPR011053Single hybrid motif
Gene3DG3DSA:2.40.50.1001.5E-9192256No hitNo description
SuperFamilySSF902291.22E-8389422IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-7391417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173391418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-14391424IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9392416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948452480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6453479IPR000571Zinc finger, CCCH-type
SMARTSM003560.019454479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-8454478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-16531566IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-10533566IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7535562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488535563IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10536562IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAAFLISGNL GCVSNARLSS FYMDFGRTRS ASMQTSYAIR SWGRQKQPQY AGFISTKQKK  60
PLSVSCSSSS EVETAADLDS LQEKKSNGIT RQIIPNSTEV QALLTEICDT TYIAEFELKL  120
AGFRLYVTRD VAGKSAPPPP PSSLPANVST TSDAPALNGS VSTPSLAIAK AVPSSGEIQR  180
MLNKDTDESL VILQSPKVGY FRRSRTIKGK RAPPSCQEKQ VVKEGQVLCF IEQLGGQIPI  240
ESDVSGEVIK ILRDDGGMSG LSLLDMVMLL LPFSPLFLES RNFSRQFGSR KQLLLTHCYK  300
TDPISTNMSV PAPPPSFFMP PFAAGGDAIG FWPQLPVDNE NSEPASRADF PPLKRPRSFE  360
DVPSNSLNNP LPNPRVLPPN PPVNKGISRI FFKTRLCSRF KAGTCPYGSN CNFAHGIDDI  420
RKPPPNWQEI VAAHAHEEDR AAGNWDEDQR IISKLKLCKK FCSGEECPYG ERCNFLHEDP  480
SKFREDSGRF RESSAISIGT TGSPGGNGTG VDQQEVNGSG NSSFDVNRMN PKPVFWKTRI  540
CNKWETTGHC PFGEKCHFAH GQAELQKYGG HTEVESGNAG TFLPKPLPNL AQDVSPTSTV  600
IGATSKQQVQ GKKCLLKWKG PEKISRIYAD WIDDLPLAYN SPNKVES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254349.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBLA0A1U7ZM760.0A0A1U7ZM76_NELNU; zinc finger CCCH domain-containing protein 39-like isoform X1
STRINGXP_010254349.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-79C3H family protein