PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006184-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

YABBY

Protein Properties

Length: 172aa MW: 19446.2 Da PI: 7.3646

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006184-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	198.4	3e-61	7	157	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + +++ +++ +++s+ +++++ NNU_006184-RA 7 VPSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL--------QAPN--FTSPEYRIELGSSSSKCNKIAMRP 92 679*****************************************999999988884........2223..333333333333333334444433 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl NNU_006184-RA 93 -----PPAINEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157 .....22333333479**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-70	8	157	IPR006780	YABBY protein
SuperFamily	SSF47095	8.64E-8	100	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	105	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSTCIDVPSE QVCYIPCNFC NIILAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 WQDLQAPNFT SPEYRIELGS SSSKCNKIAM RPPPAINEER IVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE NSNQAKLDEV KE

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254434.1	1e-124	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U7ZMF7	1e-123	A0A1U7ZMF7_NELNU; axial regulator YABBY 5-like
STRING	XP_010254434.1	1e-123	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-89	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]