PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006224-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 552aa    MW: 60776.4 Da    PI: 6.8367
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006224-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.3e-12235291155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  NNU_006224-RA 235 SVYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 291
                    78*******************4444.2455535555.779999**************98 PP
2AP252.99e-17334385155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  NNU_006224-RA 334 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 385
                    57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-15235301IPR016177DNA-binding domain
PfamPF008472.8E-9235291IPR001471AP2/ERF domain
CDDcd000183.45E-19235301No hitNo description
SMARTSM003801.6E-21236305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-13236300IPR001471AP2/ERF domain
PROSITE profilePS5103217.649236299IPR001471AP2/ERF domain
PRINTSPR003672.6E-6237248IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18334395IPR016177DNA-binding domain
CDDcd000187.13E-25334395No hitNo description
PfamPF008475.0E-11334385IPR001471AP2/ERF domain
SMARTSM003808.3E-31335399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-18335394IPR001471AP2/ERF domain
PROSITE profilePS5103219.085335393IPR001471AP2/ERF domain
PRINTSPR003672.6E-6375395IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAPADSRLSF SLSPLEMLPS CQSLMLPTKL MPYESSSDSF HHHFFFDSYD GNDWTCLKTQ  60
IPSYAEETKE VKALSIADAS ILASFNPPVQ QTVPKLEDFL GGHSSSLARY SDSQTETQES  120
SLTNVYEQGS STLFGDHRQQ QQHYNLRTTM AATGFQHSFS ANSGSEVEDS ISVNETQLRE  180
FPARSLEMGS ELVYSEAPPQ SLSLVAVKSS AKKDIVLAES ESSKKVADTF GQRTSVYRGV  240
TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GPTATINFPI  300
SDYTKELEDM KNMSRQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  360
LYLGTFGTEE EAAEAYDIAA IKFRGVNAVT NFEMSRYDIE AITNSALPIG GAAKRLKFSL  420
EASPDQNLDR DPQDRQPPSS SSSGSGSIGS LSMVPTVTCG LPVDAQSSLY QQNLIHHLHA  480
GAGSTLDFSA SSAPAFSPVV TPLALLPPTS EFCGRKFFYG LSAPVNISNH FNVTHSNRAV  540
NQQPWNVAPS SN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254563.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU21e-148AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1U7ZRD30.0A0A1U7ZRD3_NELNU; AP2-like ethylene-responsive transcription factor AIL6 isoform X2
STRINGXP_010254562.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-143AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]