PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006319-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TALE

Protein Properties

Length: 751aa MW: 81510.5 Da PI: 5.732

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006319-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.3e-09	491	528	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + NNU_006319-RA 491 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 528 664459******************************88 PP
2	BELL	119	2.1e-38	353	424	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLl +l+eVd+rY+qy++q+q+v+ssF+++ag g+akpYt+lAl++iS hFrcL dai +qi NNU_006319-RA 353 ERQDLQNKMTKLLAMLDEVDRRYRQYYHQMQIVVSSFDVIAGSGAAKPYTALALQTISCHFRCLHDAINDQI 424 799*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-56	267	422	IPR006563	POX domain
Pfam	PF07526	1.6E-49	272	420	IPR006563	POX domain
PROSITE profile	PS50071	12.163	469	532	IPR001356	Homeobox domain
CDD	cd00086	5.24E-13	472	533	No hit	No description
SMART	SM00389	1.0E-9	472	536	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-17	473	539	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-29	475	538	IPR009057	Homeodomain-like
Pfam	PF05920	5.2E-18	489	528	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MATYFPSSSN QREVMPSLYL RDPVPASFPD APVLPGNMMM YLNYPSSAGS YTDALAGNSQ 60 PQQNCVELPS VGASESTPSQ QGTLSDFVGS QFGEQTYSVW RDGKNEMSFM QSAGGPTNMQ 120 SLGAQLNSGA DDLVRSSVTE DPHMGMRTQV GMIPGGQNLQ GQGLSLSLST QIPSAIPMPS 180 FQYRNHNPAL SSLLSSHQSI SGDGGSRTSS CRDDENSQSK QSRNAEYLQP GIPGGSSNVI 240 KGEGLNNFQC LMGPKLINSD PSPYGMSGFA SVIPNSKYLK AAQQLLDEVV NVRKALKQAE 300 VDKQQSLNQF GLKGSKETEG ESKGGASLPS TTGVPSNPQE SSTSSSADLS PAERQDLQNK 360 MTKLLAMLDE VDRRYRQYYH QMQIVVSSFD VIAGSGAAKP YTALALQTIS CHFRCLHDAI 420 NDQIRATRKS LGEQDTSANS KGVGITRLRY IDQHIRQQRA LQQLGMMQQH AWRPQRGLPE 480 SSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE 540 EIGDTEMDSN SSSEASKAVK DDNKAPEDRE EELQPSVKSN TANEKGRLEQ IHDSKSDTSP 600 DVEMSWPTAG AALQDSACKG DGTDYGKMKL GGNLRPSVDD CNSLFQGTLV QSDRSGGGRF 660 MEAAAAAYQM TELGRFGSGS GVSLTLGLQH CDGGPPMSSG SHHDFITMGT NEMYNAAASS 720 VGHDVADYDC MDPGNRRQQF GSSHLLHDFV A

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MATYFPSSSN QREVMPSLYL RDPVPASFPD APVLPGNMMM YLNYPSSAGS YTDALAGNSQ  60
PQQNCVELPS VGASESTPSQ QGTLSDFVGS QFGEQTYSVW RDGKNEMSFM QSAGGPTNMQ  120
SLGAQLNSGA DDLVRSSVTE DPHMGMRTQV GMIPGGQNLQ GQGLSLSLST QIPSAIPMPS  180
FQYRNHNPAL SSLLSSHQSI SGDGGSRTSS CRDDENSQSK QSRNAEYLQP GIPGGSSNVI  240
KGEGLNNFQC LMGPKLINSD PSPYGMSGFA SVIPNSKYLK AAQQLLDEVV NVRKALKQAE  300
VDKQQSLNQF GLKGSKETEG ESKGGASLPS TTGVPSNPQE SSTSSSADLS PAERQDLQNK  360
MTKLLAMLDE VDRRYRQYYH QMQIVVSSFD VIAGSGAAKP YTALALQTIS CHFRCLHDAI  420
NDQIRATRKS LGEQDTSANS KGVGITRLRY IDQHIRQQRA LQQLGMMQQH AWRPQRGLPE  480
SSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE  540
EIGDTEMDSN SSSEASKAVK DDNKAPEDRE EELQPSVKSN TANEKGRLEQ IHDSKSDTSP  600
DVEMSWPTAG AALQDSACKG DGTDYGKMKL GGNLRPSVDD CNSLFQGTLV QSDRSGGGRF  660
MEAAAAAYQM TELGRFGSGS GVSLTLGLQH CDGGPPMSSG SHHDFITMGT NEMYNAAASS  720
VGHDVADYDC MDPGNRRQQF GSSHLLHDFV A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	478	535	1	58	Homeobox protein Meis1
4xrs_B	1e-16	478	535	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254698.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Swissprot	O65685	1e-129	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A1U7ZRQ5	0.0	A0A1U7ZRQ5_NELNU; BEL1-like homeodomain protein 6
STRING	XP_010254698.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-123	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]