PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006320-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 442aa    MW: 49269.8 Da    PI: 6.349
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006320-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093664031954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  NNU_006320-RA 366 FEHflHPYPNDSEKLILASQTGLTKNQVSNWFINARVR 403
                    664459******************************88 PP
2BELL106.31.9e-34231299472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +lq k+akL  ll+eVd rY+qy++q++ v+ssFe++ag+g+ak+Yt+lAl+a+ rhFr+L+dai+ qi
  NNU_006320-RA 231 DLQTKIAKLNALLDEVDSRYEQYYHQMEEVVSSFEVIAGVGAAKSYTALALQAMYRHFRSLRDAIVAQI 299
                    79*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-38162297IPR006563POX domain
PfamPF075261.0E-38167296IPR006563POX domain
PROSITE profilePS5007111.92344407IPR001356Homeobox domain
CDDcd000864.12E-11347408No hitNo description
SMARTSM003893.7E-9347411IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-27352413IPR009057Homeodomain-like
SuperFamilySSF466892.27E-17353414IPR009057Homeodomain-like
PfamPF059202.5E-16364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSQDSSTDP TSSVLHQFII SDTLSSRTHF EDNDFATYQS DGRNGNLFPQ SLGLLPSIHF  60
SRSIEKFQAP VISEDSETCS RRHLMIAKET DPQSQRLSLS LGSHFPPHVL VPSRPLNSDL  120
RGGSSYLVAE EESRDDYPFI GNTYTTSSTL QNQGCSTSYE IESFATMVGN SRYLKPAQSL  180
LEEVVSVGGK AIGFSSEKSL RRLAHNSRRG PLGVVSPELQ AGFCSNGFSS DLQTKIAKLN  240
ALLDEVDSRY EQYYHQMEEV VSSFEVIAGV GAAKSYTALA LQAMYRHFRS LRDAIVAQIN  300
VAKTQASQDI PRIHSGLSQL SLFDQEGRHN RGSLQHLGMI QSQRQAWRPI RGLPENSVAI  360
LRSWLFEHFL HPYPNDSEKL ILASQTGLTK NQVSNWFINA RVRLWKPMIE EMYKEEFAES  420
SEDPNSSSGN VSTARNDAPD HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15353411563Homeobox protein Meis2
3k2a_B2e-15353411563Homeobox protein Meis2
4xrm_A2e-15353411563Homeobox protein Meis2
4xrm_B2e-15353411563Homeobox protein Meis2
4xrs_A1e-15353410158Homeobox protein Meis1
4xrs_B1e-15353410158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254699.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD12e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1U7ZKX20.0A0A1U7ZKX2_NELNU; BEL1-like homeodomain protein 11
STRINGXP_010254699.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-100BEL1-like homeodomain 11