PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006343-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 403aa MW: 43994.6 Da PI: 6.7982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006343-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	312	350	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq NNU_006343-RA 312 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 350 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	300	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-5	310	354	No hit	No description
SuperFamily	SSF47459	8.24E-10	310	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-8	314	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MESANLHHQH QLQEQLVGST SLATPSFYGV GSDHSWNSNL ILNDGSFNQN VSGVFSNSRD 60 LRQNNDILIS PPLNSSMIQD MGFHWTGNAG SFTNNSANQL HLAKIKEELS DSFPKFSETV 120 TNLDEFHLPS TSYVKNEQQQ QHLHDLSEKI LLRTLSSGRI NALQHSEEEL YSDAQSCASL 180 GGIPTSSAAS FSRIFPTTNI SNKNSSSSPF SSSFGMNLQA LDLLTSTRYT GSFSQPSHGN 240 LGMLRDSLSF GLDQLQQSSH KSPYSPNKVS SFSNGVTDTK RQSSLADAKL SQAATKKPRF 300 ESRSSFPPFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ DQVEGSGDGE 360 RNEEPKRDLR SRGLCLVPLS CTSYVTNDGS GVWPPPPNFG GGT

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MESANLHHQH QLQEQLVGST SLATPSFYGV GSDHSWNSNL ILNDGSFNQN VSGVFSNSRD  60
LRQNNDILIS PPLNSSMIQD MGFHWTGNAG SFTNNSANQL HLAKIKEELS DSFPKFSETV  120
TNLDEFHLPS TSYVKNEQQQ QHLHDLSEKI LLRTLSSGRI NALQHSEEEL YSDAQSCASL  180
GGIPTSSAAS FSRIFPTTNI SNKNSSSSPF SSSFGMNLQA LDLLTSTRYT GSFSQPSHGN  240
LGMLRDSLSF GLDQLQQSSH KSPYSPNKVS SFSNGVTDTK RQSSLADAKL SQAATKKPRF  300
ESRSSFPPFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ DQVEGSGDGE  360
RNEEPKRDLR SRGLCLVPLS CTSYVTNDGS GVWPPPPNFG GGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254734.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBL	A0A1U8A0Z3	0.0	A0A1U8A0Z3_NELNU; transcription factor bHLH110-like isoform X1
STRING	XP_010254734.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-61	bHLH family protein