PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006380-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 444aa    MW: 49374.2 Da    PI: 5.3094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006380-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-062582971255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  NNU_006380-RA 258 RREKISDRMKYLQNLVPGC----NKITGKAGMLDEIINYVQSLQ 297
                    9******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.573246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-12257315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-6258301No hitNo description
Gene3DG3DSA:4.10.280.108.2E-14259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMNTALPEML HCLQTPENLA GNGADLTVLE RQRAQLKWLQ QQQQQYQQIY FSESQFNVFL  60
PPTTDALQLQ DLINNDTTLQ KLVNRSMKAD SGLANEWPDF GKYSTTSTGF AGQATSFASN  120
GLEPNSLAMG HCLSRTSSCP PAMTLPDGEG RDSVFIASVV ERERMKKRKA DEAQNPMVTV  180
SEDIRDKRVK VDAEEMESKI TEQNTSATIS DTPPTTTTHN SNKNDNANNN NNREASSDTS  240
KENPKAPQVP KPDYIHVRRE KISDRMKYLQ NLVPGCNKIT GKAGMLDEII NYVQSLQRQV  300
EFLSMKLAAV NPRIDFSVDN LFRKESAQTF PAPDCTGNFS TAGLSSEMAN PAYLQFNPVH  360
QVVSLDNPQE MALRRTFSAP MAVPADTFNE TASFTQVPHS CSTWENDLQG LYNMGFHQQG  420
RSSAGFPPHA FPGMPEANNL KMEM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254796.10.0PREDICTED: transcription factor HBI1-like isoform X1
TrEMBLA0A1U7ZL930.0A0A1U7ZL93_NELNU; transcription factor HBI1-like isoform X1
STRINGXP_010254796.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-44cryptochrome-interacting basic-helix-loop-helix 1