PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006399-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 173aa    MW: 19238.6 Da    PI: 9.3736
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006399-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-0991134344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       WT+   +l+ +a + + ++   +W  Ia+ +g g+t +++k ++
    NNU_006399-RA  91 TWTAKQNKLFEKALAIYDKDtpdRWQNIAKAVG-GKTVEEVKRHY 134
                      7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.71487142IPR017884SANT domain
SMARTSM007178.3E-988140IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1290146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-591144IPR009057Homeodomain-like
PfamPF002498.4E-791134IPR001005SANT/Myb domain
CDDcd001673.10E-791134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
SLVYKGRAWQ AIIITCPESF FSLSSHFLGS SSSAVSLCWP SHRLSQSNDP LLLIILLGGY  60
LRFPYSKRTS SHSHSAEGMA SSSLSRSSSS TWTAKQNKLF EKALAIYDKD TPDRWQNIAK  120
AVGGKTVEEV KRHYEILIED LNHIESGKVP FPNYKMTGGN NNKSNGVAEE EQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-3779160179RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254825.12e-64PREDICTED: protein RADIALIS-like 3 isoform X2
TrEMBLA0A1U7ZND34e-63A0A1U7ZND3_NELNU; protein RADIALIS-like 3 isoform X2
STRINGXP_010254824.12e-62(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-37RAD-like 1