PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006420-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 611aa    MW: 67346.9 Da    PI: 5.0268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006420-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.13.9e-1112456113374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    + Ll+cA+ +++   e+a + L rl+e +s++gdp++R+++yf+eAL +r++    +++++ p+ ets   s++ +  +k++++++P+ kf+hlta
  NNU_006420-RA 245 KSLLDCAR-LADFAPERAVKPLIRLRESVSERGDPTERVVFYFAEALYSRVST---KTARTAPTFETS---SEDFTLPYKALNDACPYSKFAHLTA 333
                    7899***9.7788999************************************9...555555666665...999999******************* PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    NqaIlea+e+++r+Hi+Df+i +G+QW+aLlqaLa+R+ g+p ++R+ g+ +p+ g   +e+l++tg+rL++fA+ l+++fef++ + + +++l+ 
  NNU_006420-RA 334 NQAILEATETANRIHIVDFGIVKGVQWAALLQALATRSTGKPsRIRLSGIPAPALGgsPAESLSATGNRLRDFAKLLDLNFEFEP-ILTPIQELNE 428
                    **************************************666659*********999999**************************.799******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    +++r+ ++E+laVn++lql++llde++   +   + L+l ksl+Pkvv++ e ea +n+ +Fl+rf  al+yysa+f+sle +l r+s er  +E 
  NNU_006420-RA 429 SSFRIVTDEVLAVNFMLQLYNLLDETTVAVE---RALRLAKSLKPKVVTLGEYEAGLNRVDFLNRFKTALRYYSAVFESLEPSLTRDSTERLRIES 521
                    ***********************99888887...9************************************************************* PP

           GRAS 288 ellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     llg +i+ vv   eg +rrer+e++e+Wr  +e +GF++v+ls++a++qak ll +++ s  y++ e+   ++ l W++ pL++vS+Wr
  NNU_006420-RA 522 LLLGSRISGVVGReEGPMRRERMEEKEQWRVLMEGCGFESVALSHYAMSQAKILLWNYNySSSYSLVESPPGFLsLAWNSVPLLTVSSWR 611
                    ***********8725778*****************************************9999**9999777777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.995217589IPR005202Transcription factor GRAS
PfamPF035141.3E-108245611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQQQQQQ QQQQQLVGIN TFSLNPWSGA HHPIANPPSF  60
AYGLGAGFSD PFPVAGTSDT GEPVLPFPHL DDPHHATEFR FSYLGGNNGG EFDSDEWMES  120
LMGGGESTES SEPPSGCDAW HNHEFSLCGG DPFVCSSSRL NLSSPSPSDL NRLVFSDTQK  180
NPNTLQAQVP TWTPLLPPPP HPPPPPPPPL ADDSPTTHPP PFNRVSDAAV IAQSPETESS  240
TPMLKSLLDC ARLADFAPER AVKPLIRLRE SVSERGDPTE RVVFYFAEAL YSRVSTKTAR  300
TAPTFETSSE DFTLPYKALN DACPYSKFAH LTANQAILEA TETANRIHIV DFGIVKGVQW  360
AALLQALATR STGKPSRIRL SGIPAPALGG SPAESLSATG NRLRDFAKLL DLNFEFEPIL  420
TPIQELNESS FRIVTDEVLA VNFMLQLYNL LDETTVAVER ALRLAKSLKP KVVTLGEYEA  480
GLNRVDFLNR FKTALRYYSA VFESLEPSLT RDSTERLRIE SLLLGSRISG VVGREEGPMR  540
RERMEEKEQW RVLMEGCGFE SVALSHYAMS QAKILLWNYN YSSSYSLVES PPGFLSLAWN  600
SVPLLTVSSW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512406111375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254864.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U8A0090.0A0A1U8A009_NELNU; scarecrow-like protein 4
STRINGXP_010254864.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein