PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006458-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 442aa MW: 46426.5 Da PI: 8.7274

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006458-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H NNU_006458-RA 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.3	0.00051	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ NNU_006458-RA 142 WKCDKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.78E-7	65	88	No hit	No description
PROSITE profile	PS50157	10.949	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.9E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.4E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.78E-7	137	162	No hit	No description
SMART	SM00355	150	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MPAELENTSA VTVSTASGEA SASSSGNQTA PPSTTTKKKR NLPGMPDPDA EVIALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPSCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAEESARA QTVANSNSEE DPKLQMVATA ATSSPPPASS APVISAGLPI 240 QNPELPERPT TLSAGSAAEP TSLCLSSTSL FAPVGAERRQ FAPLPQPAMS ATALLQKAAQ 300 MGAAGTNASL LRGLGLTMTS SSPSEQQESL QWSRRMEAEP APLAAGLGLG LPCEGGTATG 360 LTELMMGQSS LFGPRPTTLD LLGLGMGSGG APTGGLSALI TSIGGGLDVT AAAASFGGGG 420 SSPGRTWEEA SERKPNSPPA LL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MPAELENTSA VTVSTASGEA SASSSGNQTA PPSTTTKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESARA QTVANSNSEE DPKLQMVATA ATSSPPPASS APVISAGLPI  240
QNPELPERPT TLSAGSAAEP TSLCLSSTSL FAPVGAERRQ FAPLPQPAMS ATALLQKAAQ  300
MGAAGTNASL LRGLGLTMTS SSPSEQQESL QWSRRMEAEP APLAAGLGLG LPCEGGTATG  360
LTELMMGQSS LFGPRPTTLD LLGLGMGSGG APTGGLSALI TSIGGGLDVT AAAASFGGGG  420
SSPGRTWEEA SERKPNSPPA LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-38	138	207	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-38	138	207	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697030.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X3
Swissprot	Q9LVQ7	1e-161	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A151TI68	0.0	A0A151TI68_CAJCA; Zinc finger protein MAGPIE
STRING	Gorai.009G203800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-122	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]