PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006466-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23917 Da    PI: 7.5985
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006466-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1955108457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    ++++++eq+  Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  NNU_006466-RA  55 KRKLSAEQVSLLEMNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 108
                    45899***********************************************95 PP
2HD-ZIP_I/II120.86.9e-3954145293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +kr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e++rLe+ev +L+e+l+e
  NNU_006466-RA  54 RKRKLSAEQVSLLEMNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTAHESVVVEKCRLETEVLKLKEQLSE 145
                    8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.5249109IPR001356Homeobox domain
SMARTSM003899.0E-1952113IPR001356Homeobox domain
CDDcd000862.12E-1554110No hitNo description
PfamPF000468.8E-1755108IPR001356Homeobox domain
SuperFamilySSF466891.37E-1755116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2056116IPR009057Homeodomain-like
PRINTSPR000311.3E-58089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000311.3E-589105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTSNLNPQVD DQMLLISQLY PSLYAQVVPV VEGETRPRRR RKKNKGESTN VGARKRKLSA  60
EQVSLLEMNF GSEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYSKLKT  120
AHESVVVEKC RLETEVLKLK EQLSEAEKEI QRLSERSDRV SSSSPSSSFS MEADPPFLGE  180
FGVEGFDNPL YIPENYIHGM EWGNLYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13856RRRKKNKGESTNVGARKRK
24056RKKNKGESTNVGARKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254928.11e-151PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
SwissprotQ9ZU705e-75ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A1U7ZSA71e-149A0A1U7ZSA7_NELNU; homeobox-leucine zipper protein ATHB-40-like isoform X1
STRINGXP_010254928.11e-150(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-70homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]