PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006547-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 220aa    MW: 25604.9 Da    PI: 9.6119
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006547-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.39.4e-2117107199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk++ ps   +s+ l++p  f+e+++g+ ++    +l++++g++W+v+l  ++  + +++++GW++Fvk + L+ gDf+vFk+dg+s f   vk+
  NNU_006547-RA  17 FFKIFYPSR--SSDKLCIPPAFIEHFNGVVPN--WTILKNPTGKTWSVEL--QQIENDIFFQNGWQGFVKHHSLELGDFLVFKYDGNSVF--DVKI 104
                    788886655..45669*******888777544..6899************..999999****************************9999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f +
  NNU_006547-RA 105 FGR 107
                    976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2610110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2711110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.50815108IPR003340B3 DNA binding domain
CDDcd100176.18E-2015105No hitNo description
SMARTSM010196.4E-1717108IPR003340B3 DNA binding domain
PfamPF023625.1E-1817107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVKTSKRKIS SLERPQFFKI FYPSRSSDKL CIPPAFIEHF NGVVPNWTIL KNPTGKTWSV  60
ELQQIENDIF FQNGWQGFVK HHSLELGDFL VFKYDGNSVF DVKIFGRSGC EKNESLYCKS  120
GCEENEPLDY RKHREPSFVN IKEESDARGR FNKKTQVKET YSERIHEMSG ETKYGSTKSK  180
RSSSANAAED RLIETARFFK PKNPHFTVYV KRSMPYTVDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-131611010104At1g16640
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255056.11e-161PREDICTED: putative B3 domain-containing protein At5g66980 isoform X1
RefseqXP_010255057.11e-163PREDICTED: B3 domain-containing protein At1g16640-like isoform X2
TrEMBLA0A1U7ZSL91e-161A0A1U7ZSL9_NELNU; B3 domain-containing protein At1g16640-like isoform X2
TrEMBLA0A1U8A1S41e-160A0A1U8A1S4_NELNU; putative B3 domain-containing protein At5g66980 isoform X1
STRINGXP_010255056.11e-160(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-26B3 family protein