PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006549-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 110aa    MW: 12522.7 Da    PI: 9.2809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006549-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.7e-13341021588
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    + v+p kf++++ g     s   +l+ +sg+ W+v l  +k +  +++++GW+eFv+ + L+ g  +vF++dg +
  NNU_006549-RA  34 WCVIPEKFLRKFwG-T--LSSIAVLRVPSGKIWKVGL--KKVKVNVFFQNGWEEFVEYHSLQ-GHLLVFRYDGIH 102
                    679*********53.4..5557999************..999999****************8.9******99754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-1431104IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-933100IPR003340B3 DNA binding domain
CDDcd100173.85E-1333100No hitNo description
Gene3DG3DSA:2.40.330.102.3E-1533104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.92436110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MTSEFGTGSL SSFEPAGLGS LFCPGRTRIC AIDWCVIPEK FLRKFWGTLS SIAVLRVPSG  60
KIWKVGLKKV KVNVFFQNGW EEFVEYHSLQ GHLLVFRYDG IHTFMSLYLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263798.11e-23PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_010263799.11e-23PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A1U8A8U93e-22A0A1U8A8U9_NELNU; B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A1U8AE363e-22A0A1U8AE36_NELNU; B3 domain-containing transcription factor VRN1-like isoform X1
STRINGXP_010255210.16e-48(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-19B3 family protein