PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006550-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 494aa    MW: 55824 Da    PI: 7.3952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006550-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-161198195
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                   ffk+l+ +d ++  rl +p+kf++++g++   s   +l+ ++ + W++ l+ +  +gr++l++GW+eFv+  +L+eg ++ F++dg+s+f  +v 
  NNU_006550-RA 11 FFKILIGEDFTE--RLGIPRKFIRKFGEDV--SSVAVLMVRDANIWDIGLS-KDADGRVWLQNGWQEFVEYYRLCEGKILFFRYDGDSCF--CVF 98
                   788886666655..69**********8773..3478889999********4.555667*****************************999..554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-236103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-227103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-199101No hitNo description
PfamPF023623.5E-121198IPR003340B3 DNA binding domain
SMARTSM010195.9E-1411103IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68822103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGRKPARKPC FFKILIGEDF TERLGIPRKF IRKFGEDVSS VAVLMVRDAN IWDIGLSKDA  60
DGRVWLQNGW QEFVEYYRLC EGKILFFRYD GDSCFCVFIL DMSEIQYPRY PKNYEEENLD  120
KGKLVDKGER QEEDCMEFLA EFPTRTYSQK VIDGCDNQRT AKASTDNTPL QRHSCQPFNG  180
DKTCSEMLPS KPAIVATYKR KKTEDNGKLR TLAAGNAFKS VQQNNPQDNA FNFENEVGVA  240
PNHSITPDRM NDNHQKSTKN TKNVLSFAPF SSRDVDLQLV NGSEQTETPR NDTESPCPKP  300
KYGNGEISSP EQENQIARNA GGYTSSTEHE VSEVTANIRA RSKVSVSKRK SVVNEEKCGV  360
IYGHQFQSEN PFFTVIMESW HLCKGPSLVS NMNIQMAQIV TVSVSKRKSV VNEEKCRVIY  420
GHQFQSENPF FTVIMESWHL CKGPSLMEES GTSGSFTEEV GLGLAKVVLH LLGTITWKKE  480
IAVSSSLLKP TTLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255058.10.0PREDICTED: uncharacterized protein LOC104595838 isoform X1
TrEMBLA0A1U7ZLW80.0A0A1U7ZLW8_NELNU; uncharacterized protein LOC104595838 isoform X1
STRINGXP_010255058.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-22B3 family protein