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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_006553-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | B3 | ||||||||
| Protein Properties | Length: 544aa MW: 62687 Da PI: 10.7858 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 58.4 | 1.3e-18 | 15 | 107 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
ffkv++p+ + + rl++p f+++++g+ +s t+ l+ +sg+ W+v+l +k++++ ++++GW+ F k++ k gDf+vF+++g +f++ v++
NNU_006553-RA 15 FFKVFLPKPNINPERLRIPFGFLKHIKGE--GSGTVWLRGPSGNMWRVNL--TKNPDGWFFEDGWEVFLKDHISKPGDFFVFRYIG--NFHFSVQI 104
99*********************888877..777****************..********************************99..56669999 PP
E-S CS
B3 97 frk 99
f+
NNU_006553-RA 105 FDP 107
985 PP
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| 2 | B3 | 51.9 | 1.4e-16 | 266 | 356 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
f+ + s+v++s+ l++p +fa++h + ++ + +l++ s sW v l + +++r ++++GW +Fv++n ++ gD+++F+l+g e+e++v+v
NNU_006553-RA 266 FVRCIKASNVGRSSHLSIPGDFAKTHL-P-RRRTNAILRN-SQGSWIVGL--DLGRERSTIRAGWINFVRDNMIRKGDTCIFELVG--EREMRVHV 354
56677899***************9994.3.3445677777.6669*****..9999999************************998..56678998 PP
E- CS
B3 97 fr 98
f
NNU_006553-RA 355 FH 356
85 PP
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| 3 | B3 | 52.3 | 1e-16 | 464 | 540 | 17 | 98 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+p+ f +eh g+ +++++ l + +grsWe++l ++++y +++GW +Fv+ n+++ gD++ F+l+g+ + ++v++fr
NNU_006553-RA 464 HIPNYFSKEHfrGY--GKNMKILLHN-RGRSWEMNL--LVSRRQYSISRGWASFVRHNNIQKGDICAFELVGK--TDMRVRIFR 540
69999*****7643..3566676555.9********..99999***************************985..445999998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 1.5E-22 | 10 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 9.02E-22 | 11 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.24E-18 | 13 | 106 | No hit | No description |
| Pfam | PF02362 | 1.1E-16 | 15 | 106 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.69 | 15 | 108 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.2E-12 | 15 | 108 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 7.7E-23 | 258 | 356 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 8.24E-20 | 259 | 356 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.75E-16 | 264 | 355 | No hit | No description |
| Pfam | PF02362 | 2.0E-13 | 266 | 356 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.2E-15 | 266 | 358 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 14.198 | 266 | 358 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 432 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.02E-18 | 434 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 5.4E-11 | 454 | 542 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.0E-15 | 464 | 540 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.535 | 465 | 542 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.91E-13 | 465 | 540 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 544 aa Download sequence Send to blast |
MARSNRFCSG RHPCFFKVFL PKPNINPERL RIPFGFLKHI KGEGSGTVWL RGPSGNMWRV 60 NLTKNPDGWF FEDGWEVFLK DHISKPGDFF VFRYIGNFHF SVQIFDPTAC EKEASFRVKC 120 SQENNAFVEP QGNKRGREII AEALKPSPLK PFEIALKRKR VNPPQVHLER RTRNGAHKVN 180 IVSNRGRGGQ DAVSTKADKD STLPCQIKER DKHLSLRSSR HVKIEMGPVT RGRKKISDLP 240 IHETVSDTGG CCTRKAVESS SKFPYFVRCI KASNVGRSSH LSIPGDFAKT HLPRRRTNAI 300 LRNSQGSWIV GLDLGRERST IRAGWINFVR DNMIRKGDTC IFELVGEREM RVHVFHERRI 360 QSISSKSPVS SVCPCWSEAC EADPSIDLVS HEKAKIENAH LPIDEMDSHT RGCLSKGQMR 420 TEGRERVRRT AQSFTSDFPY FKWCMREYNV GGRRLILINW SMQHIPNYFS KEHFRGYGKN 480 MKILLHNRGR SWEMNLLVSR RQYSISRGWA SFVRHNNIQK GDICAFELVG KTDMRVRIFR 540 VDKK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010255065.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
| TrEMBL | A0A1U7ZLX3 | 0.0 | A0A1U7ZLX3_NELNU; B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
| STRING | XP_010255065.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 6e-20 | B3 family protein | ||||




