PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006597-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 301aa MW: 32800.7 Da PI: 7.5005

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006597-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.7e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l++++reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++++l NNU_006597-RA 8 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELSTTQREDAVNSLAYEAEARLRDPVYGCVGLISVLQQKLKQVQHDLYN 103 7********************************************************************************************999 PP DUF260 97 lkee 100 +k+e NNU_006597-RA 104 AKKE 107 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.984	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MASSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQKFANV HKVFGASNVA KLLNELSTTQ 60 REDAVNSLAY EAEARLRDPV YGCVGLISVL QQKLKQVQHD LYNAKKELSN YIGPSAMLPI 120 THQHHHHLLH HHQQHPSPSM GGPFGMSSVG MGMPPGPSAQ AQFLIREQQQ MIEAQQLAGV 180 MPMRDQHEMM RRFEQQQHDL VRFNSGFDVP AGAGGAGSSN GSGGGGFTDV PSGVGGGGYN 240 QMSAALPSSL ALVPFDNPFQ VQQPQPEHPQ QPHPPHLQQY QQQQQQHRTG SDEGRSVGPS 300 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	5	111	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	5	111	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255134.1	0.0	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-75	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1U7ZP68	0.0	A0A1U7ZP68_NELNU; LOB domain-containing protein 36
STRING	XP_010255134.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-71	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]