PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006655-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 532aa    MW: 58264.3 Da    PI: 5.4348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006655-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.91.7e-1201655322374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++ Ll++A a+++g++ +a+++Larl++ ++ +gdp qRl+ay++ AL++r++     + +  p+ e     s+e+++a+++++e sP++k+++ +
  NNU_006655-RA 165 KQSLLDAAAAIAEGNMDAATTTLARLNQVSNVQGDPEQRLTAYMVSALRSRMNP----TENPPPVME---LFSDEHMMATRMLYEGSPCFKLGFTA 253
                    578**************************************************9....333333333...349*********************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aIlea+  + + vH++DfdisqG Q+++L++aLa+R++g p s++iT+v++p++g+++ l+ +g+rL+k Ae++gv ++fnv v++++ dl+ 
  NNU_006655-RA 254 ANLAILEATRDQpNNVHVVDFDISQGSQYMSLIHALADRQHGEPtSVKITAVAEPSNGETDGLRVVGDRLRKHAERFGVGLKFNV-VSRKIRDLNR 348
                    **********999***************************76666***************************************9.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+L ++ +EalaVn++++l+r++desvs+e++rd++L++vk+l P+vv+vveqe++ n+++F+ r+ e + yy a+fdsl+a++pr+s +r+kvE+
  NNU_006655-RA 349 ETLGCNDEEALAVNFAFRLYRMPDESVSTENPRDQLLRVVKELGPRVVTVVEQEMNANTAPFVGRVGEVCAYYRAVFDSLDATMPRDSAKRVKVEE 444
                    ***********************************************************************************************9 PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      lgr++ n+vaceg er+er+e l+kWr+r+++aGF++ +l++++ +++++ l+  +  + g++++ee g +++gW+dr L+++SaWr
  NNU_006655-RA 445 C-LGRKAANMVACEGWERIERCEVLGKWRARMRMAGFEAWSLGQQVSESMRSRLNSGYrnNPGFTIKEEGGGMCFGWMDRVLTVASAWR 532
                    8.*************************************************999876657889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.1138510IPR005202Transcription factor GRAS
PfamPF035145.9E-118165532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAYRTERGGQ GRAEARLALS SPGGCFDEAE VSGTSTLTKS FGLPHLPQLR PQPFNPINHT  60
QSNSPSCTNS ALSGISFSNS VANRVVPLES EPDSDKMRSR LQELEKQLLD DNDEDEGDAA  120
SVITSSGWSE TIQGLIQNQK PLSPSPTSSS SSSSASPSSC SSSSKQSLLD AAAAIAEGNM  180
DAATTTLARL NQVSNVQGDP EQRLTAYMVS ALRSRMNPTE NPPPVMELFS DEHMMATRML  240
YEGSPCFKLG FTAANLAILE ATRDQPNNVH VVDFDISQGS QYMSLIHALA DRQHGEPTSV  300
KITAVAEPSN GETDGLRVVG DRLRKHAERF GVGLKFNVVS RKIRDLNRET LGCNDEEALA  360
VNFAFRLYRM PDESVSTENP RDQLLRVVKE LGPRVVTVVE QEMNANTAPF VGRVGEVCAY  420
YRAVFDSLDA TMPRDSAKRV KVEECLGRKA ANMVACEGWE RIERCEVLGK WRARMRMAGF  480
EAWSLGQQVS ESMRSRLNSG YRNNPGFTIK EEGGGMCFGW MDRVLTVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-511665326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255275.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-140SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1U7ZT690.0A0A1U7ZT69_NELNU; scarecrow-like protein 8
STRINGXP_010255275.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-141SCARECROW-like 8