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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_006655-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | GRAS | ||||||||
| Protein Properties | Length: 532aa MW: 58264.3 Da PI: 5.4348 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 393.9 | 1.7e-120 | 165 | 532 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++ Ll++A a+++g++ +a+++Larl++ ++ +gdp qRl+ay++ AL++r++ + + p+ e s+e+++a+++++e sP++k+++ +
NNU_006655-RA 165 KQSLLDAAAAIAEGNMDAATTTLARLNQVSNVQGDPEQRLTAYMVSALRSRMNP----TENPPPVME---LFSDEHMMATRMLYEGSPCFKLGFTA 253
578**************************************************9....333333333...349*********************** PP
GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
aN aIlea+ + + vH++DfdisqG Q+++L++aLa+R++g p s++iT+v++p++g+++ l+ +g+rL+k Ae++gv ++fnv v++++ dl+
NNU_006655-RA 254 ANLAILEATRDQpNNVHVVDFDISQGSQYMSLIHALADRQHGEPtSVKITAVAEPSNGETDGLRVVGDRLRKHAERFGVGLKFNV-VSRKIRDLNR 348
**********999***************************76666***************************************9.7********* PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
e+L ++ +EalaVn++++l+r++desvs+e++rd++L++vk+l P+vv+vveqe++ n+++F+ r+ e + yy a+fdsl+a++pr+s +r+kvE+
NNU_006655-RA 349 ETLGCNDEEALAVNFAFRLYRMPDESVSTENPRDQLLRVVKELGPRVVTVVEQEMNANTAPFVGRVGEVCAYYRAVFDSLDATMPRDSAKRVKVEE 444
***********************************************************************************************9 PP
GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
lgr++ n+vaceg er+er+e l+kWr+r+++aGF++ +l++++ +++++ l+ + + g++++ee g +++gW+dr L+++SaWr
NNU_006655-RA 445 C-LGRKAANMVACEGWERIERCEVLGKWRARMRMAGFEAWSLGQQVSESMRSRLNSGYrnNPGFTIKEEGGGMCFGWMDRVLTVASAWR 532
8.*************************************************999876657889*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 53.1 | 138 | 510 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 5.9E-118 | 165 | 532 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005737 | Cellular Component | cytoplasm | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 532 aa Download sequence Send to blast |
MAYRTERGGQ GRAEARLALS SPGGCFDEAE VSGTSTLTKS FGLPHLPQLR PQPFNPINHT 60 QSNSPSCTNS ALSGISFSNS VANRVVPLES EPDSDKMRSR LQELEKQLLD DNDEDEGDAA 120 SVITSSGWSE TIQGLIQNQK PLSPSPTSSS SSSSASPSSC SSSSKQSLLD AAAAIAEGNM 180 DAATTTLARL NQVSNVQGDP EQRLTAYMVS ALRSRMNPTE NPPPVMELFS DEHMMATRML 240 YEGSPCFKLG FTAANLAILE ATRDQPNNVH VVDFDISQGS QYMSLIHALA DRQHGEPTSV 300 KITAVAEPSN GETDGLRVVG DRLRKHAERF GVGLKFNVVS RKIRDLNRET LGCNDEEALA 360 VNFAFRLYRM PDESVSTENP RDQLLRVVKE LGPRVVTVVE QEMNANTAPF VGRVGEVCAY 420 YRAVFDSLDA TMPRDSAKRV KVEECLGRKA ANMVACEGWE RIERCEVLGK WRARMRMAGF 480 EAWSLGQQVS ESMRSRLNSG YRNNPGFTIK EEGGGMCFGW MDRVLTVASA WR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 2e-51 | 166 | 532 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010255275.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
| Swissprot | Q9FYR7 | 1e-140 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
| TrEMBL | A0A1U7ZT69 | 0.0 | A0A1U7ZT69_NELNU; scarecrow-like protein 8 | ||||
| STRING | XP_010255275.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-141 | SCARECROW-like 8 | ||||




