PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006689-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 791aa MW: 87781.8 Da PI: 8.0469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006689-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	188	209	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir H NNU_006689-RA 188 KCDKCSREFCSPINYRRHIRIH 209 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.39	187	209	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	189	209	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MVTSNLSDRG TALLYTAIQF CLGMPIPILR DCSTPNAMWS EQKFGKPEGS DSIDSFIRQA 60 IGKEPFLSFS RAGDNPVQWI QLLHALDQQG TNKFSKGPKF NDSIEGKERH LGHYNGVNSY 120 TSYSNGVKES IHHINSSGVA VKGTKSASEH MQTLKIPEAV VAFAQAAAKA NDLPGWPLIS 180 PSKAPMQKCD KCSREFCSPI NYRRHIRIHR RSLNIDKDSP KNRDILGVFW DKLSLDQCKE 240 ILSFKNVMLE EVPGSSIIRA LASFIRKLGF SSLPQTYVKA GEALLDVVQA RPSKFPLSSN 300 ELFSILDDAS EKTFLCAGTA DSLQKFVFDG EAGKVGLDMK NVVACTSFLV EQKLVKAWIA 360 DRDAEALRQA EILERRRLKK LRQKEQKSKE QTSGEKMDFK EGLPETYEDL SYSAETSSPV 420 DASNYHSCTP EGSLDHIQHV EPSRLLDIDL EVDTRNHAGF NEPDTEMATG KTNSANCQDD 480 EQQLQQESGR RQVFAARRQL TKPSRGISKG SHSGQMPLAL KVGAIQKHGT YRDQRTTSTS 540 NGHKVWTRKE KHENGEEGLS VKAQRECIDE QEQNGNSELL IGSISVTLGE CSDRCQVDIS 600 AAYIGHCTSD QHVPRRNHTQ EKAIKADYGQ GGIMNRSMVK LWRPVGKHEA GAVMTVQSET 660 RESEREGTEQ ILSNKCHLAP GNIDDNDSES RSFCLTSFSS RVAEAFLAQR WKETIAADHV 720 KLVLFPETGR PGSPGVEDDY SKRNILGNAE NLLTGVGTVE VINTGANKAK FRGKPEKSFK 780 LKYIPKQRSV T

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MVTSNLSDRG TALLYTAIQF CLGMPIPILR DCSTPNAMWS EQKFGKPEGS DSIDSFIRQA  60
IGKEPFLSFS RAGDNPVQWI QLLHALDQQG TNKFSKGPKF NDSIEGKERH LGHYNGVNSY  120
TSYSNGVKES IHHINSSGVA VKGTKSASEH MQTLKIPEAV VAFAQAAAKA NDLPGWPLIS  180
PSKAPMQKCD KCSREFCSPI NYRRHIRIHR RSLNIDKDSP KNRDILGVFW DKLSLDQCKE  240
ILSFKNVMLE EVPGSSIIRA LASFIRKLGF SSLPQTYVKA GEALLDVVQA RPSKFPLSSN  300
ELFSILDDAS EKTFLCAGTA DSLQKFVFDG EAGKVGLDMK NVVACTSFLV EQKLVKAWIA  360
DRDAEALRQA EILERRRLKK LRQKEQKSKE QTSGEKMDFK EGLPETYEDL SYSAETSSPV  420
DASNYHSCTP EGSLDHIQHV EPSRLLDIDL EVDTRNHAGF NEPDTEMATG KTNSANCQDD  480
EQQLQQESGR RQVFAARRQL TKPSRGISKG SHSGQMPLAL KVGAIQKHGT YRDQRTTSTS  540
NGHKVWTRKE KHENGEEGLS VKAQRECIDE QEQNGNSELL IGSISVTLGE CSDRCQVDIS  600
AAYIGHCTSD QHVPRRNHTQ EKAIKADYGQ GGIMNRSMVK LWRPVGKHEA GAVMTVQSET  660
RESEREGTEQ ILSNKCHLAP GNIDDNDSES RSFCLTSFSS RVAEAFLAQR WKETIAADHV  720
KLVLFPETGR PGSPGVEDDY SKRNILGNAE NLLTGVGTVE VINTGANKAK FRGKPEKSFK  780
LKYIPKQRSV T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	380	ERRRLKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255332.1	0.0	PREDICTED: uncharacterized protein LOC104596043 isoform X1
TrEMBL	A0A1U7ZPN6	0.0	A0A1U7ZPN6_NELNU; uncharacterized protein LOC104596043 isoform X1
STRING	XP_010255332.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-106	C2H2-like zinc finger protein