PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006705-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family BES1
Protein Properties Length: 726aa    MW: 81499.7 Da    PI: 6.1059
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006705-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822130.61.8e-40731752104
         DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspesslqs 96 
                    g +r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGw+v +DGtt++ +++ p++++ + +  + a   s+   
  NNU_006705-RA  73 GPRRCRPKEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWIVLPDGTTFPsRSQVPTSTSIHLQGARPAGAASNAA- 167
                    6689999*************************************************************944444554444444444444444433. PP

         DUF822  97 slkssala 104
                    +++ss+  
  NNU_006705-RA 168 VTSSSSHV 175
                    33333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3675176IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.32E-182265718IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.7E-200268718IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.4E-104274709IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-50305319IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-50326344IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060369377IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008424.0E-10448457IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.3E-50531550IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-50565581IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-50582593IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.3E-50600623IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.0E-10603613IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.3E-50640662IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.0E-10691705IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.0E-10706720IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MAQEMEKLGG TSEEDDEEMD MGVKEEDDED EDDEEKKANS DNAMINASEG IACPNSFQEQ  60
QQEQDQQLAG SGGPRRCRPK EEKERTKLRE RHRRAITARI LAGLRRHGNY NLRVRADIND  120
VIAALAREAG WIVLPDGTTF PSRSQVPTST SIHLQGARPA GAASNAAVTS SSSHVVPLQN  180
PPTSLRGGTS PGFRTIVDYR SGRMKGVYMP TSSPYGRSST TRSRTLTMAV DRGGTENSSL  240
AGNCMDTVDH KQVMDIAPRL RERDFAGTPY VPVYVMLPLG VINKKCELVD PDGLLKQLRV  300
LKSVNVDGVM VDCWWGIVEA HTPQEYNWSG YKRLFQIVRD LKLKLQVMYA HILAFKLGRG  360
GVEVVMSFHE CGGNVGDDVC IPLPHWVAEI GRSNPDIFFT DREGRRNPEC LSWGTDKERV  420
LRGRTAVEVY FDYMRSFRIE FDEFFEDGII SEIEVGLGPC GELRYPSYPV KHGWRYPGIG  480
EFQCYDQYLL KSLRKAAEVR GHSFWARGPD NAGSYNSRPH ETGFFCDGGD YDSYYGRFFL  540
NWYSQILIDH ADRVLSLAKL AFESTCIAVK LSGIHWWYKT ASHAAELTSG FYNPCNRDGY  600
AAIASMLKKH GAALNFTCVE LRTLDQHEDF PEALADPEGL VWQVLNAAWD ASIPVASENA  660
LPCHDREGYN KILENAKPLN DPDGRHLSAF TYLRLSPLLM ERNNFLEFER FVKRMHGGGD  720
GNWAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-15627072011446BETA-AMYLASE
1bya_A1e-15627072011446BETA-AMYLASE
1byb_A1e-15627072011446BETA-AMYLASE
1byc_A1e-15627072011446BETA-AMYLASE
1byd_A1e-15627072011446BETA-AMYLASE
1q6c_A1e-15627072011446beta-amylase
1uko_A1e-15627072011446Beta-amylase
1uko_B1e-15627072011446Beta-amylase
1uko_C1e-15627072011446Beta-amylase
1uko_D1e-15627072011446Beta-amylase
1ukp_A1e-15627072011446Beta-amylase
1ukp_B1e-15627072011446Beta-amylase
1ukp_C1e-15627072011446Beta-amylase
1ukp_D1e-15627072011446Beta-amylase
1wdp_A1e-15627072011446Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255371.10.0PREDICTED: beta-amylase 2, chloroplastic-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1U7ZPR40.0A0A1U7ZPR4_NELNU; Beta-amylase
STRINGXP_010255371.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]