PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006787-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 314aa    MW: 35436.7 Da    PI: 5.0285
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006787-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36251162102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i
  NNU_006787-RA  25 FLTKTYQLVDDPSIDDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKKLLCDI 111
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  NNU_006787-RA 112 HRRKI 116
                    **985 PP
2bZIP_119.81.7e-061582001759
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                    A+++R+    + +eL ++ + L +eN+ Lk el +lk+++ + 
  NNU_006787-RA 158 ATACRATSCNSAAELLDENERLRKENMHLKHELTQLKNLCNSI 200
                    88999999999*****************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.8E-4158200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAPPPVEQMG ESTAGDGQRS LPTPFLTKTY QLVDDPSIDD VISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKKLLCD IHRRKISPAV  120
TAAAVTTTAF PVVRAGSPTN SSDEQVVTST SPPSNVPATA CRATSCNSAA ELLDENERLR  180
KENMHLKHEL TQLKNLCNSI LVLMTKYANS QQENCSFLAE KPPLDLLPVK RISEDSDADT  240
LVGQSRVKTE EEISPRLFGV PIGVKRARGC EEEEEQEEQQ QQQQQQLQPP GPEAEPWDQQ  300
KSENQNHSWL KIPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-252511429129Heat shock factor protein 1
5d5v_B1e-252511429129Heat shock factor protein 1
5d5v_D1e-252511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255485.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D35e-94HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1U8A1J30.0A0A1U8A1J3_NELNU; heat stress transcription factor B-2b-like
STRINGXP_010255485.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-93HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]